FIGURE 3.

Results of application 1. Allele‐based association tests of the 60 SNPs identified in Wittke‐Thompson et al. (2005), contrasting the proposed RA method, T _RA, with the classical allelic test, T _allelic. Unfilled triangles are for SNPs with $\widehat{\delta }>0$ (T _allelic having inflated type 1 error), and filled triangles are for SNPs with $\widehat{\delta }<0$ (T _allelic having deflated type 1 error); see Figure 1 for theoretical results and Figure 2 for simulation results regarding type 1 error control of the two methods