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. 2022 Aug 3;11:e76487. doi: 10.7554/eLife.76487

Table 3. Distribution of Amsterdam infections since 2014 in pre-existing and emerging transmission chains.

Observed* Predicted
Total In pre-existing chains In emerging chains Total In pre-existing chains In emerging chains
(N) (N) (%) (N) (%) (N) (N) (%) (N) (%)
MSM (Dutch) 145 86 59.30% 59 40.70% 254 [202-318] 136 [95-188] 53.6% [44.1–62.4%] 117 [93-147] 46.4% [37.6–55.9%]
MSM (W. Europe, N. America, Oceania) 40 25 62.50% 15 37.50% 68 [49-91] 37 [23-56] 54.8% [40.5–68.1%] 31 [20-43] 45.2% [31.9–59.5%]
MSM (E. & C. Europe) 17 9 52.90% 8 47.10% 29 [18-42] 15 [8-25] 53.6% [34.2–72.7%] 13 [7-21] 46.4% [27.3–65.8%]
MSM (S. America & Caribbean) 53 24 45.30% 29 54.70% 95 [72-126] 50 [33-74] 52.8% [40.3–64.8%] 45 [31-61] 47.2% [35.2–59.7%]
MSM (Other) 42 14 33.30% 28 66.70% 76 [55-103] 37 [22-57] 48.4% [34.4–61.7%] 39 [26-56] 51.6% [38.3–65.6%]
MSM (All) 297 158 53.20% 139 46.80% 523 [427-647] 276 [200-377] 52.8% [44.6–60.7%] 246 [206-300] 47.2% [39.3–55.4%]
Heterosexual (Dutch) 14 2 14.30% 12 85.70% 38 [23-59] 14 [5-29] 37.8% [17.5–58.9%] 23 [13-38] 62.2% [41.1–82.5%]
Heterosexual (Sub-Saharan Africa) 11 4 36.40% 7 63.60% 30 [17-51] 10 [3-24] 34.3% [11.3–58.6%] 20 [11-34] 65.7% [41.4–88.7%]
Heterosexual (S. America & Caribbean) 14 8 57.10% 6 42.90% 35 [20-58] 14 [5-33] 42.9% [18.6–65.8%] 19 [10-34] 57.1% [34.2–81.4%]
Heterosexual (Other) 5 3 60.0% 2 40.0% 13 [6-23] 5 [1-12] 39.1% [9.1–70.0%] 8 [3-15] 60.9% [30.0–90.9%]
Heterosexual (All) 44 17 38.60% 27 61.40% 117 [80-173] 45 [22-83] 38.7% [22.6–54.9%] 71 [49-105] 61.3% [45.1–77.4%]
*

Parts of the actual Amsterdam transmission chains were observed in viral phylogenies of the major subtypes and circulating recombinant forms (B, 01AE, 02AG, C, D, G, A1 or 06 cpx).

Predicted based on the Bayesian branching process growth model and accounting for undiagnosed and unsampled individuals.