Table 3. Distribution of Amsterdam infections since 2014 in pre-existing and emerging transmission chains.
| Observed* | Predicted† | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Total | In pre-existing chains | In emerging chains | Total | In pre-existing chains | In emerging chains | |||||
| (N) | (N) | (%) | (N) | (%) | (N) | (N) | (%) | (N) | (%) | |
| MSM (Dutch) | 145 | 86 | 59.30% | 59 | 40.70% | 254 [202-318] | 136 [95-188] | 53.6% [44.1–62.4%] | 117 [93-147] | 46.4% [37.6–55.9%] |
| MSM (W. Europe, N. America, Oceania) | 40 | 25 | 62.50% | 15 | 37.50% | 68 [49-91] | 37 [23-56] | 54.8% [40.5–68.1%] | 31 [20-43] | 45.2% [31.9–59.5%] |
| MSM (E. & C. Europe) | 17 | 9 | 52.90% | 8 | 47.10% | 29 [18-42] | 15 [8-25] | 53.6% [34.2–72.7%] | 13 [7-21] | 46.4% [27.3–65.8%] |
| MSM (S. America & Caribbean) | 53 | 24 | 45.30% | 29 | 54.70% | 95 [72-126] | 50 [33-74] | 52.8% [40.3–64.8%] | 45 [31-61] | 47.2% [35.2–59.7%] |
| MSM (Other) | 42 | 14 | 33.30% | 28 | 66.70% | 76 [55-103] | 37 [22-57] | 48.4% [34.4–61.7%] | 39 [26-56] | 51.6% [38.3–65.6%] |
| MSM (All) | 297 | 158 | 53.20% | 139 | 46.80% | 523 [427-647] | 276 [200-377] | 52.8% [44.6–60.7%] | 246 [206-300] | 47.2% [39.3–55.4%] |
| Heterosexual (Dutch) | 14 | 2 | 14.30% | 12 | 85.70% | 38 [23-59] | 14 [5-29] | 37.8% [17.5–58.9%] | 23 [13-38] | 62.2% [41.1–82.5%] |
| Heterosexual (Sub-Saharan Africa) | 11 | 4 | 36.40% | 7 | 63.60% | 30 [17-51] | 10 [3-24] | 34.3% [11.3–58.6%] | 20 [11-34] | 65.7% [41.4–88.7%] |
| Heterosexual (S. America & Caribbean) | 14 | 8 | 57.10% | 6 | 42.90% | 35 [20-58] | 14 [5-33] | 42.9% [18.6–65.8%] | 19 [10-34] | 57.1% [34.2–81.4%] |
| Heterosexual (Other) | 5 | 3 | 60.0% | 2 | 40.0% | 13 [6-23] | 5 [1-12] | 39.1% [9.1–70.0%] | 8 [3-15] | 60.9% [30.0–90.9%] |
| Heterosexual (All) | 44 | 17 | 38.60% | 27 | 61.40% | 117 [80-173] | 45 [22-83] | 38.7% [22.6–54.9%] | 71 [49-105] | 61.3% [45.1–77.4%] |
Parts of the actual Amsterdam transmission chains were observed in viral phylogenies of the major subtypes and circulating recombinant forms (B, 01AE, 02AG, C, D, G, A1 or 06 cpx).
Predicted based on the Bayesian branching process growth model and accounting for undiagnosed and unsampled individuals.