Table 1.
Illumina sequencing data after quality filtering as input for assembly (a) and assembly results (b) for Beta patula and B.v. maritima
(a) | ||||
---|---|---|---|---|
Input data | ||||
Beta patula | Beta vulgaris ssp. maritima | |||
Insert size (kbp) | Filtered pairs (million) | Insert size (kbp) | Filtered pairs (million) | |
Paired‐end | 0.6 | 336 | 0.6* | 390 |
Mate‐pair | 2.5 | 56 | 2.5* | 30 |
4 | 17 | 2.5 | 41 | |
5 | 58 | 5* | 35 | |
6 | 27 | 5 | 42 | |
9 | 28 | 10 | 22 |
(b) | ||
---|---|---|
Assembly results | ||
Beta patula | Beta vulgaris ssp. maritima | |
Total size | 624 Mbp | 590 Mbp |
Sequences ≥ 500 bp | 41 354 | 28 626 |
N50 size | 271 kbp | 176 kbp |
N50 number | 654 | 887 |
N90 size | 20 kbp | 24 kbp |
N90 number | 2905 | 4177 |
Avg. seq. length | 15 kbp | 21 kbp |
Longest sequence | 1.68 Mbp | 2.42 Mbp |
Asterisks refer to data sets generated with previous work (Capistrano‐Gossmann et al., 2017). In (b), only scaffolds and contigs of length 500 bp or larger were considered.