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. 2022 Mar 10;20(3):793–809. doi: 10.1007/s12021-022-09566-7

Table 2.

Examples of EBT and CUT neurons returned from Competency query CQ1: Find all examples of parvalbumin containing neurons. The form of the parvalbumin indicator is highlighted in red. Only one example is provided from the Allen EBT (total 59). Full results are available in Gillespie et al. (2020). The compact identifier for each class is prefixed (in bold) to the localLabel for ease of reference. The local label preserves the form in which the molecule was measured. The Common/original name represents the common name from the superclass for all of the physiological subtypes for the Markram cells. However, for the local label we provide a subtype as the superclass does not include the full molecular profile in the name

Type # Common/original name NPO localLabel
CUT 6 nifext:56: Neocortex basket cell nifext:56: Mammalia neocortex L2/3 Basket + PV + GABA intrinsic neuron
EBT Markram 16 npokb:112: Nest basket cell npokb:112: Rattus norvegicus S1 Nest basket (intersectionOf AC b) Fast spiking + GABA + calbindin + CR + NPY + PV + VIP -SST intrinsic neuron (Markram2015)
EBT Huang 2 npokb:43: PVBC cortical neuron npokb:43: Mus musculus neocortex Basket + GABA + PV-cre intrinsic neuron (Huang2017)
EBT Allen 59 none npokb:434: Mus musculus female left cerebral hemisphere VISrl2_3 -Apical Dendrite -Spiny + Pvalb-T2A-FlpO + Vipr2-IRES2-Cre + Ai65(RCFL-tdT) neuron (AllenCT)