Skip to main content
. 2022 Sep 24;25(10):105183. doi: 10.1016/j.isci.2022.105183
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

KI67 Abcam ab16667
CYCLIND1 Abcam ab16663
c-MYC MilliporeSigma C3956
V5 Invitrogen R960-25
HA MilliporeSigma H9658
WNT5A Proteintech 55184-1-AP
WNT5B Abclonal A8313
WNT1 Proteintech 27935-1-AP
E-CADHERIN BD 610181
α-TUBULIN Santa Cruz sc-5286
HSP90 Abcam ab13492
CALNEXIN Enzo ADI-SPA-860-F
SEL1L Abcam ab78298
HRD1 (for Western blot) Dr. Richard Wojcikiewicz, SUNY Upstate Medical University Pearce et al., 2007
HRD1 (for IHC) MilliporeSigma HPA024300

Bacterial and virus strains

AAV8 University of Michigan Vector Core pAAV8-D(+)-U6-siRNA-CMV-GFP

Biological samples

Frozen biopsies of hepatocellular carcinoma tumor samples and adjacent normal liver tissue University of Michigan Pathology https://www.pathology.med.umich.edu/
Human hepatocellular carcinoma tissue section microarray US Biomax, Inc. HLivH180Su14

Chemicals, peptides, and recombinant proteins

DEN MilliporeSigma N0258
CCL4 MilliporeSigma 289116
Recombinant Wnt5A R&D systems 645-WN-010

Critical commercial assays

TMTsixplex™ Isobaric Label Reagent Set ThermoFisher PI90061

Deposited data

Proteomics analysis of purified microsomes PRIDE ProteomeXchange PXD035243
cDNA profiling data of total liver GEO GSE118658
Liver Hepatocellular Carcinoma TCGA Pan Cancer Atlas dataset cBio Portal for Cancer Genomics https://www.cbioportal.org/

Experimental models: Cell lines

HEK293T ATCC CRL-3216
HepG2 ATCC HB-8065
Huh7 Dr. Kezhong Zhang, Wayne State University Dr. Christopher M. Schonhoff, Tufts University Cummings School of Veterinary Medicine

Experimental models: Organisms/strains

Mice: Sel1Lf/f;Alb-Cre/+ and Sel1Lf/f Dr. Ling Qi, University of Michigan Bhattacharya et al. (2018)
Mice: Hrd1f/f;Alb-Cre/+ and Hrd1f/f Dr. Deyu Fang, Northwestern University Wei et al. (2018)

Oligonucleotides

Primers and siRNA See Table S2 for sequences N/A

Recombinant DNA

Active-WNT5A-V5 Addgene 43813
pAAV8-D(+)-U6-siRNA-CMV-GFP Addgene 85451
HRD1 plasmid (MYC-tagged WT and mutant C2A) Dr. Yihong Ye, NIDDK Kikkert et al. (2004)
pcDNA3-HA-Ub Dr. Hideki Nishitoh, University of Miyazaki Sun et al. (2015)

Software and algorithms

Kaplan-Meier Plotter http://kmplot.com/analysis, Menyhart et al. (2018)
Gene Expression Profiling Interactive Analysis (GEPIA) http://gepia.cancer-pku.cn/index.html Tang et al. (2017)