Antibodies |
|
KI67 |
Abcam |
ab16667 |
CYCLIND1 |
Abcam |
ab16663 |
c-MYC |
MilliporeSigma |
C3956 |
V5 |
Invitrogen |
R960-25 |
HA |
MilliporeSigma |
H9658 |
WNT5A |
Proteintech |
55184-1-AP |
WNT5B |
Abclonal |
A8313 |
WNT1 |
Proteintech |
27935-1-AP |
E-CADHERIN |
BD |
610181 |
α-TUBULIN |
Santa Cruz |
sc-5286 |
HSP90 |
Abcam |
ab13492 |
CALNEXIN |
Enzo |
ADI-SPA-860-F |
SEL1L |
Abcam |
ab78298 |
HRD1 (for Western blot) |
Dr. Richard Wojcikiewicz, SUNY Upstate Medical University |
Pearce et al., 2007 |
HRD1 (for IHC) |
MilliporeSigma |
HPA024300 |
|
Bacterial and virus strains |
|
AAV8 |
University of Michigan Vector Core |
pAAV8-D(+)-U6-siRNA-CMV-GFP |
|
Biological samples |
|
Frozen biopsies of hepatocellular carcinoma tumor samples and adjacent normal liver tissue |
University of Michigan Pathology |
https://www.pathology.med.umich.edu/ |
Human hepatocellular carcinoma tissue section microarray |
US Biomax, Inc. |
HLivH180Su14 |
|
Chemicals, peptides, and recombinant proteins |
|
DEN |
MilliporeSigma |
N0258 |
CCL4 |
MilliporeSigma |
289116 |
Recombinant Wnt5A |
R&D systems |
645-WN-010 |
|
Critical commercial assays |
|
TMTsixplex™ Isobaric Label Reagent Set |
ThermoFisher |
PI90061 |
|
Deposited data |
|
Proteomics analysis of purified microsomes |
PRIDE ProteomeXchange |
PXD035243 |
cDNA profiling data of total liver |
GEO |
GSE118658 |
Liver Hepatocellular Carcinoma TCGA Pan Cancer Atlas dataset |
cBio Portal for Cancer Genomics |
https://www.cbioportal.org/ |
|
Experimental models: Cell lines |
|
HEK293T |
ATCC |
CRL-3216 |
HepG2 |
ATCC |
HB-8065 |
Huh7 |
Dr. Kezhong Zhang, Wayne State University |
Dr. Christopher M. Schonhoff, Tufts University Cummings School of Veterinary Medicine |
|
Experimental models: Organisms/strains |
|
Mice: Sel1Lf/f;Alb-Cre/+ and Sel1Lf/f
|
Dr. Ling Qi, University of Michigan |
Bhattacharya et al. (2018) |
Mice: Hrd1f/f;Alb-Cre/+ and Hrd1f/f
|
Dr. Deyu Fang, Northwestern University |
Wei et al. (2018) |
|
Oligonucleotides |
|
Primers and siRNA |
See Table S2 for sequences |
N/A |
|
Recombinant DNA |
|
Active-WNT5A-V5 |
Addgene |
43813 |
pAAV8-D(+)-U6-siRNA-CMV-GFP |
Addgene |
85451 |
HRD1 plasmid (MYC-tagged WT and mutant C2A) |
Dr. Yihong Ye, NIDDK |
Kikkert et al. (2004) |
pcDNA3-HA-Ub |
Dr. Hideki Nishitoh, University of Miyazaki |
Sun et al. (2015) |
|
Software and algorithms |
|
Kaplan-Meier Plotter |
http://kmplot.com/analysis, |
Menyhart et al. (2018) |
Gene Expression Profiling Interactive Analysis (GEPIA) |
http://gepia.cancer-pku.cn/index.html |
Tang et al. (2017) |