Table 1.

Classification of polygenomic infections as cotransmission or superinfection using .)

	Classification
> 0.4	Cotransmission
0.3 > > 0.4	Likely cotransmission
−0.1> > 0.3	Superinfection, COI = 2
−0.1 > > -0.2	Superinfection, likely COI = 2
−0.4> > -0.2	Superinfection, COI = 3
−0.6 > > -0.4	Superinfection, likely COI = 3
−0.8< < -0.6	Superinfection, likely COI = 4
−0.8 <	Superinfection, COI = 4

The boundaries and classification notations are based on the standards for Bayes factor classification described in ref. (36)