Table.
Clinical, demographic and mutations details of patients
| Sample ID | Age/sex | Symptoms | Mode of infection | Comorbidities | Geographical location | Date of oropharyngeal swab tested | Date of stool sample received in the lab | Ct values for E genes in stool | Treated | Lineage | Spike mutations of interest |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2003583 | 46/male | Asymptomatic (high containment zone) | No | Chinchawad, Pune | December 24, 2020 | December 26, 2020 | 30.08 | No | B.1.36.16 | D614G | |
| 2001729 | 16/male | Sore throat | No | Nanapeth, Pune | May 15, 2020 | May 21, 2020 | 21.96 | No | B.1.1.306 | D614G | |
| 2001676-3 (repeat samples) | 37/male | Fever, breathing problem, in ICU | Symptomatic health care worker | Diabetes | Vadagaon, Pune | May 4, 2020 | June 9, 2020 | 29.18 | Yes* | B.1.1.281 | D614G: Q677R |
| 2001676-4 (repeat samples) | 37/male | Fever, breathing problem, in ICU | Symptomatic health care worker | Diabetes | Vadagaon, Pune | May 4, 2020 | June 19, 2020 | 31.55 | Yes* | B.1.1.281 | D614G: Q677R |
| 2001692-1 | 22/male | Mild fever, sore throat | Symptomatic health care worker | No | Dhole Patil Road, Pune | May 1, 2020 | May 26, 2020 | 27.8 | No | B.1.1.281 | D614G: F1220L |
| 2001884 | 67/female | Diarrhoea only | Hypertension | Shivaji Nagar, Pune | May 27, 2020 | June 12, 2020 | 28.02 | No | B.1.1.306 | D614G | |
| 2002247 | 30/male | Asymptomatic | Healthcare worker | No | Sangli | August 2, 2020 | August 5, 2020 | 26.5 | No | B.1.1.306 | D614G |
| 2002157 | 80/male | ICU, severely ill | Hypertension | Kothrud | July 23, 2020 | July 27, 2020 | 26.13 | No | B.1.210 | D614G | |
| 2002181 | 65/male | Cough, headache | No | Chikali | August 1, 2020 | August 4, 2020 | 28.75 | No | B.1.1.306 | D614G: Y789H | |
| 210357 | 60/female | Symptomatic, breathlessness | No | Jalgaon | February 12, 2021 | February 11, 2021 | 19.13 | No | B.1.36.29 | D614G: N440K, S929I | |
| 210354 | 70/male | Fever, weakness | Diabetes mellitus, hypertension, traumatic bleed Epilepsy Anaemia |
Kothrud, Pune | February 7, 2021 | February 11, 2021 | 29.59 | No | B.1.617.1# | P681R: D614G L452R: E484Q G142D: S94T E154K: D1153Y Q1071H: V382L | |
| 210014 | 33/male | Sore throat, fever, nasal discharge | No | Ravet, Pune | January 1, 2021 | January 7, 2021 | 28.89 | No | B.1.1.421 | D614G: Y351P T345C: N343R, F342Y, F347L, N481H, A348C, S349T, S816T, A344C |
* Treated: Repeat sample collected after discharge from hospital after treatment completion; # RT-PCR not done at NIV. Ct, cycle threshold; RT-PCR, reverse transcription polymerase chain reaction; ICU, intensive care unit; NIV, National Institute of Virology