Table 2.
Functional enrichment analysis of high and low risk groups in the TCGA cohort
| ONTOLOGY | ID | Description | Gene Ratio | Bg Ratio | p-value | p.adjust | q-value |
|---|---|---|---|---|---|---|---|
| BP | GO:0006958 | complement activation, classical pathway | 42/152 | 137/18670 | 7.04 e-56 | 1.64 e-52 | 1.43 e-52 |
| BP | GO:0002455 | humoral immune response mediated by circulating immunoglobulin | 42/152 | 150/18670 | 5.81 e-54 | 6.76 e-51 | 5.90 e-51 |
| BP | GO:0006956 | complement activation | 42/152 | 175/18670 | 8.80 e-51 | 6.83 e-48 | 5.96 e-48 |
| BP | GO:0072376 | protein activation cascade | 42/152 | 198/18670 | 2.70 e-48 | 1.57 e-45 | 1.37 e-45 |
| BP | GO:0016064 | immunoglobulin mediated immune response | 43/152 | 218/18670 | 5.32 e-48 | 2.48 e-45 | 2.16 e-45 |
| CC | GO:0019814 | immunoglobulin complex | 50/158 | 159/19717 | 1.00 e-67 | 1.57 e-65 | 1.50 e-65 |
| CC | GO:0042571 | immunoglobulin complex, circulating | 27/158 | 72/19717 | 8.58 e-39 | 6.73 e-37 | 6.41 e-37 |
| CC | GO:0072562 | blood microparticle | 21/158 | 147/19717 | 1.48 e-20 | 7.73 e-19 | 7.36 e-19 |
| CC | GO:0009897 | external side of plasma membrane | 29/158 | 393/19717 | 7.06 e-20 | 2.77 e-18 | 2.64 e-18 |
| CC | GO:0034364 | high-density lipoprotein particle | 4/158 | 26/19717 | 5.17 e-05 | 0.002 | 0.002 |
| MF | GO:0003823 | antigen binding | 42/133 | 160/17697 | 1.76 e-54 | 4.76 e-52 | 4.20 e-52 |
| MF | GO:0034987 | immunoglobulin receptor binding | 26/133 | 76/17697 | 5.08 e-37 | 6.86 e-35 | 6.04 e-35 |
| MF | GO:0008009 | chemokine activity | 5/133 | 49/17697 | 3.25 e-05 | 0.003 | 0.003 |
| MF | GO:0042379 | chemokine receptor binding | 5/133 | 66/17697 | 1.38 e-04 | 0.008 | 0.007 |
| MF | GO:0015926 | glucosidase activity | 3/133 | 14/17697 | 1.42 e-04 | 0.008 | 0.007 |
| KEGG | hsa04061 | Viral protein interaction with cytokine and cytokine receptor | 8/57 | 100/8076 | 4.17 e-07 | 5.76 e-05 | 5.19 e-05 |
| KEGG | hsa04060 | Cytokine-cytokine receptor interaction | 9/57 | 295/8076 | 1.97 e-04 | 0.010 | 0.009 |
| KEGG | hsa03320 | PPAR signaling pathway | 5/57 | 78/8076 | 2.09 e-04 | 0.010 | 0.009 |
| KEGG | hsa05323 | Rheumatoid arthritis | 5/57 | 93/8076 | 4.74 e-04 | 0.016 | 0.015 |
| KEGG | hsa04978 | Mineral absorption | 4/57 | 59/8076 | 7.61 e-04 | 0.021 | 0.019 |