Table 4.
KEGG analyses of gene distribution to various functional signaling pathways according to their read counts
| Sample | Li | Niu | |||||
|---|---|---|---|---|---|---|---|
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| Term | Count | % | P value | Term | Count | % | P value |
| hsa05200: Pathways in cancer | 44 | 3.049203 | 0.023812 | hsa05200: Pathways in cancer | 70 | 2.659574 | 0.04867 |
| hsa03013: RNA transport | 34 | 2.356202 | 1.96E-06 | hsa04151: PI3K-Akt signaling pathway | 66 | 2.507599 | 0.014145 |
| hsa05169: Epstein-Barr virus infection | 27 | 1.871102 | 0.005192 | hsa04510: Focal adhesion | 46 | 1.74772 | 0.002661 |
| hsa05202: Transcriptional misregulation in cancer | 23 | 1.593902 | 0.015794 | hsa04810: Regulation of action cytoskeleton | 42 | 1.595745 | 0.028737 |
| hsa03040: Spliceosome | 21 | 1.455301 | 0.004734 | hsa05205: Proteoglycans in cancer | 41 | 1.557751 | 0.019779 |
| hsa04068: FoxO signaling pathway | 19 | 1.316701 | 0.02169 | hsa05203: Viral Carcinogenesis | 41 | 1.557751 | 0.028682 |
| hsa04611: Platelet activation | 18 | 1.247401 | 0.03177 | hsa03013: RNA transport | 35 | 1.329787 | 0.034929 |
| hsa04110: Cell cycle | 17 | 1.178101 | 0.040597 | hsa03040: Spliceosome | 31 | 1.177812 | 0.008055 |
| hsa03015: mRNA surveillance pathway | 16 | 1.108801 | 0.00582 | hsa04068: FoxO signaling pathway | 30 | 1.139818 | 0.016021 |
| hsa04919: Thyroid hormone signaling pathway | 16 | 1.108801 | 0.04007 | hsa03010: Ribosome | 29 | 1.101824 | 0.031774 |
| hsa00650: Butanoate metabolism | 7 | 0.4851 | 0.018468 | hsa04919: Thyroid hormone signaling pathway | 26 | 0.987842 | 0.020687 |
| hsa03060: Protein export | 6 | 0.4158 | 0.033538 | hsa04512: ECM-receptor interaction | 23 | 0.87386 | 0.005493 |
| hsa05100: Bacterial invasion of epithelial cells | 22 | 0.835866 | 0.00298 | ||||
| hsa04666: Fc gamma R-mediated phagocytosis | 20 | 0.759878 | 0.030033 | ||||
| hsa05222: Small cell lung cancer | 20 | 0.759878 | 0.033609 | ||||
| hsa05213: Endometrial cancer | 14 | 0.53915 | 0.031693 | ||||
| hsa04621: NOD-like receptor signaling pathway | 14 | 0.53915 | 0.048042 | ||||
| hsa00650: Butanoate metabolism | 10 | 0.379939 | 0.01114 | ||||