| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Deposited data | ||
| Benchmark dataset of US-align2 | figshare | https://doi.org/10.6084/m9.figshare.20102945.v2 |
| Software and algorithms | ||
| SPalign | (Yang et al., 2012) | https://sparks-lab.org/downloads/ |
| SPalignNS | (Brown et al., 2016) | https://sparks-lab.org/downloads/ |
| CLICK | (Nguyen et al., 2011) | http://cospi.iiserpune.ac.in/click/ |
| MASS | (Dror et al., 2003) | http://bioinfo3d.cs.tau.ac.il/MASS/ |
| GANGSTA+ | (Guerler and Knapp, 2008) | https://github.com/guerler/gplus |
| SAMO | (Chen et al., 2006) | http://doc.aporc.org/wiki/Samo |
| DALI | (Holm and Sander, 1993) | http://ekhidna2.biocenter.helsinki.fi/dali/ |
| CE | (Shindyalov and Bourne, 1998) | http://ce.sdsc.edu/ce.html |
| RMalign | (Zheng et al., 2019) | http://rnabinding.com/RMalign/RMalign.html |
| ARTS | (Dror et al., 2006) | http://bioinfo3d.cs.tau.ac.il/ARTS/ |
| US-align2 | This paper | https://github.com/pylelab/USalign |
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