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. 2022 Sep 27;25(10):105227. doi: 10.1016/j.isci.2022.105227
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-DDI2 This study N/A
anti-DDI2 Abcam ab197081
anti-NRF1 Cell signaling 8052
anti-NRF2 Cell signaling 12721, RRID: AB_2715528
anti-Tubulin Adipogen AG-27B-0005-C100, RRID: AB_2490494
anti-MT Enzo Life Sciences ADI-SPA-550-D, RRID: AB_2039383
anti-ubiquitin Cell signaling 3936, RRID: AB_331292
anti-K48 Abcam EP8589
anti-PSMB8 Cell signaling 13726, RRID: AB_2798304
anti-PSMB5 Cell signaling 12919, RRID: AB_2798061

Chemicals, peptides, and recombinant proteins

Bortezomib LC-Laboratories B-1408
Carfilzomib LC-Laboratories C-3022
H2O2 Sigma-Aldrich 216763-100ML
CdCl2 Sigma-Aldrich 202908-10G
NaAsO2 Sigma-Aldrich 35000-1L-R
K2Cr2O7 Sigma-Aldrich 207802-100g
ZnSO4 Sigma-Aldrich 83265
tBHQ Sigma-Aldrich 112941-5g
NaF Sigma-Aldrich 201154
Na4P2O7 Sigma-Aldrich P8010
MG132 Sigma-Aldrich c2211-5mg
Suc-LLVY-AMC Enzo Life Sciences BML-P802-0005
Z-ARR-AMC Calbiochem CAS 90468-18-1
Z-LLE-AMC Adipogen CAS 348086-666-8
AMC Biovision K245-100-4
Purified human proteasome complexes Bio-Techne E−365-025

Critical commercial assays

RNeasy mini kit QIAGEN 74104
2X Reverse Transcription master mix Applied Biosystems 4368814
KAPA HiFi HotStart PCR Kit KapaBiosystems KK2502
Pierce BCA Protein assay Thermo Fisher Scientific 23227
TBARS kit Abnova KA4409
Catalase activity Biovision K773
SOD activity Biovision K335
MTS assay Promega G1111
Dual-Luciferase Assay System Promega E1910

Deposited data

RNA-seq data Gene Expression Omnibus GSE198150
Raw data for immunoblots Mendeley https://doi.org/10.17632/9krjdj44p5.1

Experimental models: Cell lines

HepG2 Pascal Schneider, University of Lausanne N/A

Experimental models: Organisms/strains

DDI2flox/flox This study N/A
DDI2flox/floxAlbCre+ This study N/A
DDI2KO This study N/A
NRF2lacZ/lacZ Prof. M. Yamamoto Tohoku University Graduate School of Medicine, Japan N/A
DDI2flox/floxAlbCre−; NRF2lacZ/lacZ This study N/A

Oligonucleotides

RT-PCR ACTIN: fwd 5′-TACCACCA
TGTACCCAGGCA-3′ rev 5′-CTCAGGA
GGAGCAATGATCTTGAT-3′
This study N/A
RT-PCR GAPDH: fwd 5′-CGCTC
TCTGCTCCTCCTG-3′, rev 5′-CGAT
GGTGTCTGAGCGAT-3′
This study N/A
RT-PCR Mt1: fwd 5′-ATGGAC
CCCAACTGCTCCT-3′, rev 5′-AC
AGCCCTGGGCACATTT-3′
This study N/A
RT-PCR Mt2: fwd 5′-CCGATCTC
TCGTCGATCTTCAACC-3′, rev 5′-CA
GGAGCAGCAGCTTTTCTTGCAG-3′
This study N/A
RT-PCR NFE2L1: fwd 5′-TGGAACAGC
AGTGGCAAGATCTCA-3′, rev 5′-GGCA
CTGTACAGGATTTCACTTGC-3′
This study N/A
RT-PCR NFE2L2: fwd 5′-TTCCCGG
TCACATCGAGAG-3′, rev 5′-TCC
TGTTGCATACCGTCTAAATC-3′
This study N/A
RT-PCR MT2A: fwd 5′-CTCTTC
AGCTCGCCATGGAT-3′, rev 5′-TG
GAAGTCGCGTTCTTTACA-3′
This study N/A
RT-PCR MT1G: fwd 5′-TTGCAA
TGGACCCCAACT-3′, rev 5′-TC
CTGGATTTTACGGGTCAC-3′
This study N/A
RT-PCR NQO1: fwd 5′-CAGCT
CACCGAGAGCCTAGT-3′, rev 5′-AG
TGCTCTTCTGCCGACCAT-3′
This study N/A
RT-PCR PSMA4 (human): fwd 5′- CCC
TTTGGTGTTTTGCT-3′, rev 5’ – GCT
GCAGCGCTATTATTTCC-3′
This study N/A
RT-PCR Psma4 (mouse): fwd 5’ – AAAAG
TGGAAATCGCCACAC-3′, rev 5’ – TTT
CTTTCTTCTCCCGCTCA-3′
This study N/A
SgLuci fwd 5′-CACCGCTTCGAAA
TGTCCGTTCGGT-3′, rev 5′- AAAC
ACCGAACGGACATTTCGAAGC-3′
(Op et al., 2022) N/A
SgDDI2 fwd 5′- CACCGGCTCGAAG
TCGGCGTCGAC-3′, rev 5′- AAACG
GTCGACGCCGACTTCGAGCC-3′
(Op et al., 2022) N/A
SgNRF1 fwd 5′- CACCGCTTTCT
CGCACCCCGTTGTC-3′, rev 5′- AAA
CGACAACGGGGTGCGAGAAAGC-3′
(Op et al., 2022) N/A

Recombinant DNA

LentiCRISPR-v2 vector Addgene 52961
MT-Firefly-luciferase reporter Prof. M. Yamamoto Tohoku University Graduate School of Medicine, Japan (Ohtsuji et al., 2008)

Software and Algorithms

R bioconductor package “limma” Bioconductor R version 3.1.1, limma version 3.20.8