| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| anti-DDI2 | This study | N/A |
| anti-DDI2 | Abcam | ab197081 |
| anti-NRF1 | Cell signaling | 8052 |
| anti-NRF2 | Cell signaling | 12721, RRID: AB_2715528 |
| anti-Tubulin | Adipogen | AG-27B-0005-C100, RRID: AB_2490494 |
| anti-MT | Enzo Life Sciences | ADI-SPA-550-D, RRID: AB_2039383 |
| anti-ubiquitin | Cell signaling | 3936, RRID: AB_331292 |
| anti-K48 | Abcam | EP8589 |
| anti-PSMB8 | Cell signaling | 13726, RRID: AB_2798304 |
| anti-PSMB5 | Cell signaling | 12919, RRID: AB_2798061 |
| Chemicals, peptides, and recombinant proteins | ||
| Bortezomib | LC-Laboratories | B-1408 |
| Carfilzomib | LC-Laboratories | C-3022 |
| H2O2 | Sigma-Aldrich | 216763-100ML |
| CdCl2 | Sigma-Aldrich | 202908-10G |
| NaAsO2 | Sigma-Aldrich | 35000-1L-R |
| K2Cr2O7 | Sigma-Aldrich | 207802-100g |
| ZnSO4 | Sigma-Aldrich | 83265 |
| tBHQ | Sigma-Aldrich | 112941-5g |
| NaF | Sigma-Aldrich | 201154 |
| Na4P2O7 | Sigma-Aldrich | P8010 |
| MG132 | Sigma-Aldrich | c2211-5mg |
| Suc-LLVY-AMC | Enzo Life Sciences | BML-P802-0005 |
| Z-ARR-AMC | Calbiochem | CAS 90468-18-1 |
| Z-LLE-AMC | Adipogen | CAS 348086-666-8 |
| AMC | Biovision | K245-100-4 |
| Purified human proteasome complexes | Bio-Techne | E−365-025 |
| Critical commercial assays | ||
| RNeasy mini kit | QIAGEN | 74104 |
| 2X Reverse Transcription master mix | Applied Biosystems | 4368814 |
| KAPA HiFi HotStart PCR Kit | KapaBiosystems | KK2502 |
| Pierce BCA Protein assay | Thermo Fisher Scientific | 23227 |
| TBARS kit | Abnova | KA4409 |
| Catalase activity | Biovision | K773 |
| SOD activity | Biovision | K335 |
| MTS assay | Promega | G1111 |
| Dual-Luciferase Assay System | Promega | E1910 |
| Deposited data | ||
| RNA-seq data | Gene Expression Omnibus | GSE198150 |
| Raw data for immunoblots | Mendeley | https://doi.org/10.17632/9krjdj44p5.1 |
| Experimental models: Cell lines | ||
| HepG2 | Pascal Schneider, University of Lausanne | N/A |
| Experimental models: Organisms/strains | ||
| DDI2flox/flox | This study | N/A |
| DDI2flox/floxAlbCre+ | This study | N/A |
| DDI2KO | This study | N/A |
| NRF2lacZ/lacZ | Prof. M. Yamamoto Tohoku University Graduate School of Medicine, Japan | N/A |
| DDI2flox/floxAlbCre−; NRF2lacZ/lacZ | This study | N/A |
| Oligonucleotides | ||
| RT-PCR ACTIN: fwd 5′-TACCACCA TGTACCCAGGCA-3′ rev 5′-CTCAGGA GGAGCAATGATCTTGAT-3′ |
This study | N/A |
| RT-PCR GAPDH: fwd 5′-CGCTC TCTGCTCCTCCTG-3′, rev 5′-CGAT GGTGTCTGAGCGAT-3′ |
This study | N/A |
| RT-PCR Mt1: fwd 5′-ATGGAC CCCAACTGCTCCT-3′, rev 5′-AC AGCCCTGGGCACATTT-3′ |
This study | N/A |
| RT-PCR Mt2: fwd 5′-CCGATCTC TCGTCGATCTTCAACC-3′, rev 5′-CA GGAGCAGCAGCTTTTCTTGCAG-3′ |
This study | N/A |
| RT-PCR NFE2L1: fwd 5′-TGGAACAGC AGTGGCAAGATCTCA-3′, rev 5′-GGCA CTGTACAGGATTTCACTTGC-3′ |
This study | N/A |
| RT-PCR NFE2L2: fwd 5′-TTCCCGG TCACATCGAGAG-3′, rev 5′-TCC TGTTGCATACCGTCTAAATC-3′ |
This study | N/A |
| RT-PCR MT2A: fwd 5′-CTCTTC AGCTCGCCATGGAT-3′, rev 5′-TG GAAGTCGCGTTCTTTACA-3′ |
This study | N/A |
| RT-PCR MT1G: fwd 5′-TTGCAA TGGACCCCAACT-3′, rev 5′-TC CTGGATTTTACGGGTCAC-3′ |
This study | N/A |
| RT-PCR NQO1: fwd 5′-CAGCT CACCGAGAGCCTAGT-3′, rev 5′-AG TGCTCTTCTGCCGACCAT-3′ |
This study | N/A |
| RT-PCR PSMA4 (human): fwd 5′- CCC TTTGGTGTTTTGCT-3′, rev 5’ – GCT GCAGCGCTATTATTTCC-3′ |
This study | N/A |
| RT-PCR Psma4 (mouse): fwd 5’ – AAAAG TGGAAATCGCCACAC-3′, rev 5’ – TTT CTTTCTTCTCCCGCTCA-3′ |
This study | N/A |
| SgLuci fwd 5′-CACCGCTTCGAAA TGTCCGTTCGGT-3′, rev 5′- AAAC ACCGAACGGACATTTCGAAGC-3′ |
(Op et al., 2022) | N/A |
| SgDDI2 fwd 5′- CACCGGCTCGAAG TCGGCGTCGAC-3′, rev 5′- AAACG GTCGACGCCGACTTCGAGCC-3′ |
(Op et al., 2022) | N/A |
| SgNRF1 fwd 5′- CACCGCTTTCT CGCACCCCGTTGTC-3′, rev 5′- AAA CGACAACGGGGTGCGAGAAAGC-3′ |
(Op et al., 2022) | N/A |
| Recombinant DNA | ||
| LentiCRISPR-v2 vector | Addgene | 52961 |
| MT-Firefly-luciferase reporter | Prof. M. Yamamoto Tohoku University Graduate School of Medicine, Japan | (Ohtsuji et al., 2008) |
| Software and Algorithms | ||
| R bioconductor package “limma” | Bioconductor | R version 3.1.1, limma version 3.20.8 |