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. 2022 May 16;11:530. [Version 1] doi: 10.12688/f1000research.110194.1

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Copyright: © 2022 Walker K et al.

This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — User provided variant call format (VCF) (or iVar output) files are annotated and ultimately converted into JavaScript object notation (JSON). The resulting JSON files serve as the primary input into the database. Secondary input can be provided by supplying any relevant metadata with the sample accession numbers serving as key. The resulting database can be queried directly via mongoDB command-line interface (CLI) or summarized and presented visually via the corresponding R Shiny app. AWS: Amazon web services.