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. 2022 Mar 3;72(3):005243. doi: 10.1099/ijsem.0.005243

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Fig. 1. — Maximum-likelihood core-genome phylogeny of the family Rhizobiaceae . A maximum-likelihood phylogeny 94 Rhizobiaceae strains is shown. The number of strains included in each collapsed clade is indicated. Clades of focus in the current study are expanded along the righthand side of the figure. The phylogeny is built from the concatenated alignments of 170 nonrecombinant loci using IQ-TREE [14]. The numbers on the nodes indicate the approximate Bayesian posterior probabilities support values (first value) and ultra-fast bootstrap values (second value). The tree was rooted using three Mesorhizobium spp. sequences as the outgroup. The scale bar represents the number of expected substitutions per site under the best-fitting GTR+F+ASC+R8 model. An expanded phylogeny is provided as Fig. S1.