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. Author manuscript; available in PMC: 2023 Oct 10.
Published in final edited form as: Cancer Cell. 2022 Sep 22;40(10):1128–1144.e8. doi: 10.1016/j.ccell.2022.08.015

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit monoclonal anti-cleaved PARP Cell signaling technology Cat# 5625S RRID: AB_10699459
Mouse monoclonal anti-β-actin Cell signaling technology Cat# 3700S RRID: AB_2242334
Rabbit monoclonal anti-LKB1 Cell signaling technology Cat# 3047S RRID: AB_2198327
Rabbit monoclonal anti-cGAS Cell signaling technology Cat#15102S RRID: AB_2732795
Rabbit monoclonal anti-STING Cell signaling technology Cat#13647S AB 732796
Rabbit monoclonal anti-STING (Rodent preferred) Cell signaling technology Cat#50494S RRID: AB_2799375
Rabbit monoclonal anti-phospho STAT1 (Tyr701) Cell signaling technology Cat#9167S RRID: AB_561284
Rabbit polyclonal anti-STAT1 Cell signaling technology Cat#9172S RRID: AB_2198300
Rabbit polyclonal anti-IFNAR1 Thermo Fisher Scientific Cat#A304-290A RRID: AB_2620486
Rabbit monoclonal anti-phospho-Histone H2A.X (Ser139) Cell signaling technology Cat#9718S RRID: AB_2118009
Rabbit monoclonal anti-Histone H3 Cell signaling technology Cat#4499S RRID: AB_10544537
Rabbit monoclonal anti-phospho-TBK1/NAK (Ser172) Cell signaling technology Cat#5483S RRID: AB_10693472
Rabbit monoclonal anti-TBK1/NAK Cell signaling technology Cat#3013S RRID: AB_2199749
Rabbit monoclonal anti-DNMT1 Cell signaling technology Cat#5032S RRID: AB_10548197
Mouse monoclonal anti- PCNA Dako Cat#M0879 RRID: AB_2160651
Rabbit monoclonal anti-Aurora B/AIM1 Cell signaling technology Cat# 3094 RRID: AB_10695307
Mouse monoclonal anti-TTK/MPS1 abcam Cat# ab11108 RRID: AB_297757
Rabbit monoclonal anti-Lamin B2 abcam Cat#ab151735 RRID: AB_2827514
Alexa Fluor 700 anti-mouse CD3 Biolegend Cat#100216 RRID: AB_493697
Brilliant Violet 711 anti-mouse CD4 Biolegend Cat# 100550 RRID: AB_2562099
PE/Dazzle 594 anti-mouse CD8a Biolegend Cat# 100762 RRID: AB_2564026
Brilliant Violet 711 anti-mouse/human CD11b Biolegend Cat# 101242 RRID: AB_11218791
Brilliant Violet 605 anti-mouse CD19 Biolegend Cat# 115540 RRID: AB_11203538
Brilliant Violet 785 anti-mouse CD25 Biolegend Cat# 102051 RRID: AB_2564131
Brilliant Violet 510™ anti-mouse CD45 Biolegend Cat# 103138 RRID: AB_2561392
PerCP/Cyanine5.5 anti-mouse CD49b Biolegend Cat# 108916 RRID: AB_2129358
PerCP/Cyanine5.5 anti-mouse Ly-6G Biolegend Cat# 127616 RRID: AB_1877271
PE anti-mouse CD223 (LAG-3) Biolegend Cat# 125208 RRID: AB_2133343
Brilliant Violet 421 anti-mouse CD279 (PD-1) Biolegend Cat# 135218 RRID: AB_2561447
APC anti-mouse CD366 (Tim-3) Antibody Biolegend Cat# 134008 RRID: AB_2562998
FOXP3 Monoclonal Antibody (FJK-16s), PE-Cyanine7 Thermo Fisher Scientific Cat# 25-5773-82 RRID: AB_891552
FITC anti-human CD183 (CXCR3) Biolegend Cat# 353703 RRID: AB_10962910
FITC anti-human HLA-A,B,C Biolegend Cat# 311404 RRID: AB_314873
PE/Cyanine7 anti-human CD274 (B7-H1, PD-L1) Biolegend Cat# 329738 RRID: AB_2617010
PerCP/Cyanine5.5 Mouse IgG2b, κ Isotype Ctrl Biolegend Cat# 400338 RRID: AB_10765682
FITC Mouse IgG2a, κ Isotype Ctrl Biolegend Cat# 400208 RRID: AB_10764135
STING Polyclonal Antibody Thermo Fisher Scientific Cat# PA5-23381 RRID: AB_2540904
ERGIC53 Monoclonal monoclonal antibody AXXORA Cat# PSC-PM-7213-C100
CD3ε (D4V8L) Rabbit mAb Cell signaling technology Cat# 99940 RRID: AB_2755035
CD8α (D4W2Z) XP Rabbit mAb (Mouse Specific) Cell signaling technology Cat# 98941 AB 2756376
InVivoMAb anti-mouse CD8α Bio X cell Cat# BE0004-1 RRID: AB_1107671
Biological Samples
Patient-derived cell lines Köhler et al. 2021 N/A
PBMC STEMCELL Cat#70025
Chemicals, Peptides, and Recombinant Proteins
2’3’-cGAMP Invivogene Cat# tlrl-nacga23 CAS#:1441190-66-4
ADU-S100 Chemietek Cat# CT-ADUS100 CAS#:1638750-95-4
ruxolitinib Selleck chemicals Cat# S1378 CAS#:941678-49-5
cisplatin Sigma Aldrich Cat# 232120 CAS#: 15663-27-1
docetaxel Selleck chemicals Cat# S1148 CAS#:114977-28-5
etoposide Sigma Aldrich Cat# 341205 CAS#:33419-42-0
vinorelbine Sigma Aldrich Cat# V2264 CAS#:125317-39-7
pemetrexed Selleck chemicals Cat# S1135 CAS#:150399-23-8
methotrexate Sigma Aldrich Cat# A6770 CAS#:133073-73-1
aminopterin Sigma Aldrich Cat# A1784 CAS#:54-62-6
nocodazole Sigma Aldrich Cat# M1404 CAS#:31430-18-9
hydroxyurea Sigma Aldrich Cat# H8627 CAS#:127-07-1
olaparib Selleck chemicals Cat# S1060 CAS#:763113-22-0
barasertib Cayman Chemical Cat# 11602 CAS#:722544-51-6
MK5108 Cayman Chemical Cat# 21266 CAS#:1010085-13-8
ceralasertib Cayman Chemical Cat# 21035 CAS#:1352226-88-0
prexasertib Cayman Chemical Cat# 21490 CAS#:1234015-52-1
CFI-402257 Cayman Chemical Cat# 21960 CAS#:1610759-22-2
volasertib Cayman Chemical Cat# 18193 CAS#:755038-65-4
BAY-1217389 Selleck chemicals Cat# S8215 CAS#:1554458-53-5
CC-671 MedChemExpress Cat# HY-108709 CAS :1618658-88-0
Human IFN-γ R&D systems Cat# 285-IF-100
Human IL-2 Thermo Fisher Scientific Cat# PHC0021
Human IL-7 Thermo Fisher Scientific Cat# PHC0075
Human IL-15 Thermo Fisher Scientific Cat# PHC9154
decitabine Selleck chemicals Cat# S1200 CAS#:2353-33-5
GSK126 Selleck chemicals Cat# S7061 CAS#:1346574-57-9
Poly(dA:dT) InvivoGen Cat# tlrl-patn CAS#:86828-69-5
Critical Commercial Assays
Human IFN-β ELISA kit Thermo Fisher Scientific Cat# 414101
HumanCXCL10 ELISA kit R&D systems Cat# DIP100
Human 2’3’-cGAMPv ELISA kit Cayman Chemical Cat# 501700
Human Granzyme B ELISA kit R&D systems Cat# DGZB00
Mouse Cytokine/Chemokine Magnetic Bead Panel Merck Millipore Cat# MCYTMAG-70K-PX32
CellTiter-Glo luminescent cell viability assay kit Promega Cat# G7572
Deposited Data
Experimental Models: Cell Lines
Human: A549 ATCC CCL-185
Human: HCC44 Broad Institute N/A
Human: NCI-H23 ATCC CRL-5800
Human: NCI-H1355 ATCC CRL-5865
Human: NCI-H2122 ATCC CRL-5985
Human: NCI-H2030 ATCC CRL-5914
Human: NCI-H2009 ATCC CRL-5911
Human: NCI-H1792 ATCC CRL-5895
Human: NCI-H441 ATCC HTB-174
Human: NCI-H358 ATCC CRL-5807
Human: NCI-H1944 ATCC CRL-5907
Human: NCI-H647 ATCC CRL-5834
Human: A-427 ATCC HTB-53
Human: Jurkat, Clone E6-1 ATCC TIB-152
Human: HEK293T ATCC CRL-3216
Human: NK-92 ATCC CRL-2407
Human: THP-1 ATCC TIB-202
Human: DFCI-24 Köhler et. al. 2021 N/A
Human: DFCI-298 Köhler et. al. 2021 N/A
Human: DFCI-316 Köhler et. al. 2021 N/A
Human: DFCI-332 Köhler et. al. 2021 N/A
Mouse: LLC ATCC CRL-1642
Mouse: CMT167 ECACC 10032302
Mouse: 393P Gibbons et. al. 2009 N/A
Mouse: Lacun3 Bleau et. al. 2014 N/A
Experimental Models: Organisms/Strains
Mouse: 129S2/SvPasCrl Charles River Laboratories Strain #: 476
Mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ The Jackson Laboratory Strain #: 005557
Recombinant DNA
pLX304-NanoLuc Kitajima et al 2019 N/A
pLX304-human LKB1 Kitajima et al 2019 N/A
pLX304-human STING Kitajima et al 2019
pLX304-human cGAS Campisi et al 2020
pLX307-human CXCR3 Kitajima et al 2019
pCRISPRv2-puro-scramble sgRNA control, see Table S2 Broad Institute N/A
pCRISPRv2-puro-human LKB1 sgRNA, see Table S2 Kitajima et al 2019
pCRISPRv2-puro-human cGAS sgRNA, see Table S2 Campisi et al 2020
pCRISPRv2-puro-human STING sgRNA, see Table S2 Campisi et al 2020
pCRISPRv2-puro-human IFNAR1 sgRNA, see Table S2 This paper
pCRISPRv2-puro-human STAT1 sgRNA, see Table S2 Campisi et al 2020
pCRISPRv2-puro-human ATG5 sgRNA, see Table S2 This paper
pCRISPRv2-puro-mouse scramble sgRNA control, see Table S2 This paper
pCRISPRv2-puro-mouse LKB1 sgRNA, see Table S2 This paper
pCRISPRv2-blast-mouse STING sgRNA, see Table S2 This paper
pCMV-dR8.91 (lentivirus packaging) Broad Institute N/A
pCMV-VSV-G Broad Institute N/A
Sequence-Based Reagents N/A
Primers for qRT-PCR, see Table S2 This paper
Software and Algorithms
GraphPad Prism7 GraphPad Software, Inc. http://www.graphpad.com/
sgRNA designer Broad Institute http://portals.broadinstitute.org/gpp/public/analysis-tools/sgrna-design
Other