TABLE 3.
Average total energy and ΔE = E bound—E unbound, of the WT and Y10A forms of Aβ1-42 complexes bound to cyclotide and their corresponding control (unbound) trajectories across the 300 ns simulation time.
Extracted MD properties | WT Aβ1-42 fibril bound to cyclotide | WT Aβ1-42 fibril unbound | Y10A mutant Aβ1-42 bound to cyclotide | Y10A mutant Aβ1-42 unbound |
---|---|---|---|---|
Avg. ± Std. Dev. | Avg. ± Std. Dev. | Avg. ± Std. Dev. | Avg. ± Std. Dev. | |
Total Energy, E (kcal/mol) | −112034.286 ± 141.646 | −113048.818 ± 139.697 | −111248.254 ± 144.482 | −111668.352 ± 145.094 |
Difference in Total Energy, ΔE (kcal/mol) | −1,014.528 ± 194.386 | −420.109 ± 199.832 |