5-mC	5-methylcytosine
5-hmC	5-hydroxymethylcytosine
TET	Ten eleven translocases
IDC	Invasive ductal carcinoma
DCIS	Ductal carcinoma in situ
FC	Fold change
p	p-value
padj	p-adjusted value
FDR	False discovery rate
L2FC	log-2-fold change
TPM	Transcript per million
RRHP	Reduced representation hydroxymethylation profiling
WGS	Whole-genome sequencing
MeDIP	Methylated DNA immunoprecipitation
BC	Breast cancer
LRT	Likelihood ratio test
TSSs	transcription start sites
TFBS	transcription factor binding sites