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. Author manuscript; available in PMC: 2023 Oct 10.
Published in final edited form as: Cancer Cell. 2022 Oct 10;40(10):1173–1189.e6. doi: 10.1016/j.ccell.2022.09.001

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Protein G magnetic beads conjugated with antibodies Dynabeads, Life Technology Y13 clone antibody specific to murine H-2Kb TP25.99.8.4 clone antibody specific to human HLA-A,B,C
FITC-conjugated H2-Kb antibody Biologend clone AF6–88.5
APC-conjugated anti-H-2Db antibody Biolegend clone KH95
PerCP/Cy5.5-conjugated anti-HLA-A2 antibody BD Biosciences clone BB7.2
immunoproteasome detection kit UPBIO J4160
classical proteasome detection kit UPBIO J4120
Anti-nitrotyrosine antibody Sigma N0409
Ani-PD-1 BioXcell clone RMP1–14
Anti-CTLA-4 BioXcell clone 9D9
Anti-DDX6 ThermoFisher PA555012
Anti-PRICKLE1 ThermoFisher 22589–1-AP
Anti-ELF3 ThermoFisher PA589261
Anti-LDHB ThermoFisher PA596736
Anti-IFT25 ThermoFisher 15732–1-AP
Anti-PICK1 ThermoFisher PA1073
Anti-STT3A ThermoFisher 12034–1-AP
Anti-RPS15A ThermoFisher PA5103532
Anti-beta Actin (BA3R) ThermoFisher MA515739
5-(and 6)-Carboxyfluorescein diacetate succinimidyl ester Kit, CFDA SE Kit Biolegend 423801
Anti-mouse IFN-γ mAb (AN18) Mabtech 3321–3-250
 
 
Chemicals, peptides, and recombinant proteins
Peptides used in the study are listed in Figure S1 GenScript N/A
Tumor Dissociation Kit, mouse Miltenyi 130–096-730
CD8a (Ly-2) MicroBeads, mouse Miltenyi 130–117-044
Omaveloxolone (RTA-408) Reata Pharmaceutical N/A
Nitroaspirin (NCX-4016) Sigma SML1669
Hoechst 33342 dye ThermoFisher H3570
N-Nitro-L-arginine methylester (L-NAME) Sellechem S2877
Deposited data
The mass spectrometry proteomics data MassIVE (http://massive.ucsd.edu) MSV000087990
The mass spectrometry proteomics data ProteomeXchange (http://www.proteomexchange.org) PXD027956
 
Experimental models: Cell lines
UACC-903 Originally from University of Arizona Cell Collection Provided by Dr. M. Herlyn, Wistar Institute RRID:CVCL_4052
EG7 ATCC CRL-2113
B16F10 ATCC CRL-6475
B16F10-iNOS This manuscript This manuscript
T2 cells ATCC CRL-1992
RMA-S cells Gift from Dr. Eisenlohr RRID: CVCL_2180
EL-4 ATCC TIB-39
LLC ATCC CRL-1642
CT26 ATCC CRL-2638
 
Experimental models: Organisms/strains
PMEL transgenic mice B6.Cg-Thy1a/Cy Tg(TcraTcrb)8Rest/J Jackson Lab RRID:IMSR_JAX:005023
BALB/c mice Charles River
C57BL/6 mice Charles River
C57BL/6 mice Envigo
Oligonucleotides
See Table S9
 
Biological Samples
Tissue samples University of Lausanne Cancer Immun. 2004 May 19;4:4. PMID: 15149168
Biological Samples
Tissue samples University of Pennsylvania Nature. 2017 May 4;545(7652):60–65. 10.1038/nature22079
 
 
Software and algorithms
GraphPad Prizm Dotmatics 8.4.3