Table 2. Permeabilities for PROTACs 1–3a.
PROTAC | CRBN (cell) IC50 (μM) | CRBN (bio) IC50 (μM) | CRBN, ratio cell/biob | PAMPA (−log Pe, cm/s) | Ppassivec (nm/s) |
---|---|---|---|---|---|
1 | 0.924 ± 0.119 | 0.244 ± 0.028 | 4 | 6.56 ± 004 | 30 ± 1.5 |
2 | 16.9 ± 1.41 | 1.41 ± 0.207 | 12 | n.d.d | 11 ± 1.7 |
3 | 18.0 ± 2.07 | 0.667 ± 0.066 | 27 | >7.37 | 6 ± 1.4 |
The potencies for binding to CRBN are mean values ± SEM from five or six repeats. PAMPA data are mean values ± SEM from three repeats. Permeabilities across Caco-2 cell monolayers are mean values ± SEM from two or three repeats.
Highly permeable PROTACs have a low cell/bio ratio, while the opposite is true for low-permeable ones.
Passive permeability (Ppassive) across Caco-2 cell monolayers at pH 7.4 was calculated as the geometric mean of Papp AB and Papp BA (Table S1), i.e. Ppassive = (PappAB × PappBA)0.5.
Not determined.