Table 6.
Genome–wide significant SNPs are associated with body conformation traits.
| Traits | SNP name | BTA | Position (Mb) | MAF | Nearest gene | Distance (kb)* | P-value | SNP effect |
|---|---|---|---|---|---|---|---|---|
| BFCI | ARS–BFGL–NGS−39319 | 8 | 31.33 | 0.3836 | MPDZ | 122.75(D) | 4.59E−08 | −1.3217 |
| BFCI | BovineHD1000015574 | 10 | 52.01 | 0.3450 | AQP9 | 75.39(U) | 3.07E−09 | 1.5722 |
| BFCI | BovineHD1200008803 | 12 | 29.84 | 0.1481 | HSPH1 | 19.83(U) | 3.72E−08 | 1.9433 |
| BFCI | BovineHD1300012605 | 13 | 42.81 | 0.4622 | PYGB | 0.61(D) | 8.06E−08 | 1.2185 |
| BFCI | ARS–BFGL–NGS−66252 | 16 | 50.24 | 0.0805 | MMEL1 | 31.03(U) | 2.79E−08 | 2.4780 |
| BFCI | BovineHD1600023101 | 16 | 77.36 | 0.4538 | ATP6V1G3 | 47.95(U) | 9.44E−08 | 1.1905 |
| BFCI | BovineHD1700005623 | 17 | 19.11 | 0.4050 | SLC7A11 | 307.12(U) | 2.82E−08 | 1.4169 |
| BFCI | BovineHD1900015024 | 19 | 53.08 | 0.3546 | RBFOX3 | Intron | 4.39E−07 | 1.2520 |
| BFCI | BTA−50244–no–rs | 20 | 34.30 | 0.3710 | PTGER4 | 541.63(D) | 5.84E−13 | −1.9115 |
| BFCI | BovineHD2200000513 | 22 | 1.99 | 0.1302 | EOMES | 123.32(U) | 2.09E−07 | 1.8111 |
| DCCI | BovineHD0300021562 | 3 | 73.79 | 0.4351 | NEGR1 | Intron | 1.03E−07 | −1.2304 |
| DCCI | BTB−00190417 | 4 | 59.09 | 0.3496 | DNAJB9 | 493.74(U) | 4.93E−11 | 1.6662 |
| DCCI | BovineHD4100004660 | 6 | 38.22 | 0.4271 | LCORL | 665.01(D) | 2.39E−09 | −1.4509 |
| DCCI | ARS–BFGL–BAC−15023 | 12 | 31.34 | 0.4103 | MTUS2 | Intron | 6.74E−08 | 1.2696 |
| DCCI | BTB−00597065 | 15 | 41.00 | 0.3527 | GALNT18 | 64.26(U) | 9.91E−10 | 1.5227 |
| DCCI | BTA−50244–no–rs | 20 | 34.30 | 0.3710 | PTGER4 | 541.63(D) | 6.11E−08 | −1.2173 |
| DCCI | ARS–BFGL–NGS−97747 | 23 | 28.02 | 0.3840 | CDSN | 4.46(U) | 1.77E−09 | 1.4608 |
| FTLEG | BovineHD0100020157 | 1 | 69.85 | 0.0962 | SNX4 | 37.98(U) | 2.04E−07 | −2.4836 |
| FTLEG | ARS–BFGL–NGS−56584 | 1 | 145.09 | 0.1309 | POFUT2 | Intron | 7.56E−08 | 2.0359 |
| FTLEG | BovineHD0300019080 | 3 | 63.66 | 0.1248 | ADGRL2 | 511.07(D) | 1.06E−08 | 2.5317 |
| FTLEG | BTB−01326707 | 6 | 38.00 | 0.2737 | LCORL | 665.01(D) | 3.16E−11 | −2.0018 |
| FTLEG | BTB−00124923 | 9 | 34.94 | 0.1851 | FRK | 243.36(D) | 3.42E−07 | 1.7253 |
| FTLEG | BovineHD1300012605 | 13 | 42.81 | 0.4622 | PYGB | 0.61(D) | 2.23E−09 | 1.6065 |
| FTLEG | Hapmap50322–BTA−34017 | 13 | 78.20 | 0.1309 | CEBPB | 7.25(U) | 8.11E−08 | −2.2401 |
| FTLEG | BovineHD1600000840 | 16 | 3.12 | 0.1191 | KLHDC8A | 11.96(D) | 3.74E−07 | 2.1807 |
| FTLEG | BovineHD1600008381 | 16 | 28.91 | 0.1683 | TMEM63A | 1.14(D) | 7.79E−09 | −2.1564 |
| FTLEG | BovineHD2000011811 | 20 | 41.04 | 0.3221 | SUB1 | 26.79(U) | 4.00E−11 | −1.9453 |
| FTLEG | BTA−14388–rs29023151 | 22 | 23.20 | 0.4561 | IL5RA | Intron | 8.59E−10 | 1.6383 |
*U, Upstream; D, Downstream.