Bacterial and virus strains |
|
PY79 (B. subtilis wild type) |
(Youngman et al., 1984) |
NA |
BKK30700 (rpmEB::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK22880 (ypfD::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK28470 (lysC::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK40350 (rocR::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK05850 (gmuR::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK29010 (speD::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK05950 (ydiF::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK35940 (rbsA::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK25100 (zur::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK15770 (prkC::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK13400 (ykoU::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK19430 (cdaS::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK00650 (yabS::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK13350 (ykoN::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK00630 (yabR::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK33620 (yvaK::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK02330 (ybfQ::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK29830 (ytpQ::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK13250 (ykoG::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK10000 (yhaH::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK05770 (ydhI::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK31390 (yugI::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK24250 (ahrC::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
BKK37790 (rocG::kan) |
B. subtilis Strain Collection (Koo et al., 2017) |
NA |
LR14 (mls-turboID-ywlEHAx2) |
This study |
NA |
LR30 (ahrC::kan) |
This study |
NA |
LR31 (rocR::mls) |
This study |
NA |
LR32 (rocR::mls, ahrC::kan) |
This study |
NA |
LR33 (gudB::tet) |
This study |
NA |
LR38 (gudB::tet, rocR::mls, ahrC::kan) |
This study |
NA |
LR127 (gudB::tet, rocR::mls, ahrC::kan amyE::PIPTG-rocG-spc) |
This study |
NA |
LR133 (gudB::tet, rocR::mls, ahrC::kan amyE::PspoIID-rocG-cat) |
This study |
NA |
LR134 (gudB::tet, rocR::mls, ahrC::kan amyE::PsspE-rocG-cat) |
This study |
NA |
LR137 (gudB::tet, rocG::kan) |
This study |
NA |
LR197 (rocABC::spc) |
This study |
NA |
LR198 (rocDEF::cat) |
This study |
NA |
LR200 (gudB::tet, rocABC::spc) |
This study |
NA |
LR201 (gudB::tet, rocDEF::cat) |
This study |
NA |
LR203 (gudB::tet rocABC::spc, rocDEF::cat) |
This study |
NA |
LR205 (rocR::mls, ahrC::kan amyE::rocR-ahrC-cat) |
This study |
NA |
LR207 (gudB::tet, rocR::mls, ahrC::kan amyE::rocR-ahrC-cat) |
This study |
NA |
BDP87 (amyE::PspoIIQ-lucH245F-cat) |
A gift from Prof. Lee Kroos (Parrell and Kroos, 2020). |
NA |
LR209 (gudB::tet amyE::PspoIIQ-lucH245F-cat) |
This study |
NA |
LR211 (gudB::tet, rocR::mls, ahrC::kan amyE::PspoIIQ-lucH245F-cat) |
This study |
NA |
LR225 (sacA::PIPTG-rocG-spc) |
This study |
NA |
LR227 (gudB::tet, rocR::mls, ahrC::kan amyE::PspoIIQ-lucH245F-cat sacA::PIPTG-rocG-spc) |
This study |
NA |
|
Chemicals, peptides, and recombinant proteins |
|
Chloramphenicol |
Sigma-Aldrich |
Cat#: C0378 |
Tetracycline |
Sigma-Aldrich |
Cat#: 87128 |
Kanamycin |
US Biological |
Cat#: K0010 |
Lincomycin |
Sigma-Aldrich |
Cat#: 62143-5G |
Erythromycin |
Sigma-Aldrich |
Cat#: E0774 |
Spectinomycin |
Sigma-Aldrich |
Cat#: S4014-5G |
Ampicillin |
Sigma-Aldrich |
Cat#: A9518-25G |
L-Alainine |
MP BIOMEDICALS |
Cat#: 100287 |
Difco™ Nutrient Broth |
BD Biosciences |
Cat#: 234000 |
L-aspargine |
Sigma-Aldrich |
Cat#:A8381-100G |
D-glucose |
Sigma-Aldrich |
Cat#:1632-1KG |
D-fructose |
Sigma-Aldrich |
Cat#:F3510-500G |
Histodenz |
Sigma-Aldrich |
Cat#:D2158-100G |
RQ1 DNase |
Promega |
Cat#:M610A |
Terbium(III) chloride hexahydrate |
Sigma-Aldrich |
Cat#:212903 |
|
Critical commercial assays |
|
Q5 High-Fidelity DNA Polymerase |
NEW ENGLAND BioLabs |
Cat#: M0491S |
Gibson Assembly Master Mix |
NEW ENGLAND BioLabs |
Cat#: E2611L |
Quick Ligation Kit |
NEW ENGLAND BioLabs |
Cat#: M2200S |
ENLITEN® ATP Assay System |
Promega |
Cat#:FF2000 |
Halt™ Protease Inhibitor Cocktail (100X) |
Thermo |
Cat#: 78438 |
iScript™ cDNA Synthesis Kit |
BIO-RAD |
Cat#:170-8891 |
iTaq Universal SYBR Green Supermix |
BIO-RAD |
Cat#: 1725124 |
FastRNA PRO™ BLUE KIT |
MP BIOMEDICALS |
Cat#: 116025050 |
|
Recombinant DNA |
|
pDR111 (amyE::PIPTG-spc) |
a gift from David Rudner (Harvard Medical School) |
NA |
pDG364 (amyE::cat) |
(Guerout-Fleury et al., 1996) |
NA |
pET2 (amyE::gfp-cat) |
laboratory stock |
NA |
pLR4 (amyE::PIPTG-rocG-spc) |
This study |
NA |
pLR5 (amyE::PspoIID-rocG-cat) |
This study |
NA |
pLR6 (amyE::PsspE-rocG-cat) |
This study |
NA |
pLR7 (amyE::ProcR-rocR-PahrC-ahrC-cat) |
This study |
NA |
|
Sequence-based reagents |
|
Primers used in this study are listed in Table S1. |
All primers were designed during this study, and synthesized by Integrated DNA Technologies (IDT). |
NA |