Table 3.
Quality assessment of sequencing date.
| Sample | Clean reads | Clean bases | Q20(%) | Q30(%) | GC content(%) |
|---|---|---|---|---|---|
| sl_1 | 54,313,760 | 80,26,863,149 | 98.27 | 95.01 | 54.53 |
| sl_2 | 44,389,142 | 6,555,398,259 | 98.35 | 95.26 | 56.73 |
| sl_3 | 48,539,644 | 7,211,649,150 | 98.75 | 95.98 | 54.97 |
| ll_1 | 46,095,306 | 6,861,678,422 | 98.76 | 95.99 | 54.88 |
| ll_2 | 51,839,210 | 7,677,991,815 | 98.25 | 94.95 | 54.92 |
| ll_3 | 49,484,182 | 7,363,615,166 | 98.74 | 95.92 | 53.94 |
sl and ll represent short and long photoperiod groups, respectively. 1/2/3 represent three biological replicates for each group. Clean reads: total number of sequencing data entries after quality control. Clean bases: total sequencing data volume after quality control (i.e., number of clean reads multiplied by the length of reads). Q20 and Q30: the percentage of bases with sequencing quality above 99% and 99.9% of the total bases, respectively. GC content: Quality control (QC) data corresponded to the sum of G and C bases as a percentage of the total bases.