Table 4.

Statistical results of the comparison with the reference genome.

Sample	Total reads	Total mapped	Multiple mapped	Uniquely mapped
sl_1	54,313,760	40,223,184(74.06%)	1,160,976(2.14%)	39,062,208(71.92%)
sl_2	44,389,142	30,206,700(68.05%)	1,050,449(2.37%)	29,156,251(65.68%)
sl_3	48,539,644	35,760,428(73.67%)	1,084,433(2.23%)	34,675,995(71.44%)
ll_1	46,095,306	34,149,665(74.08%)	1,158,824(2.51%)	32,990,841(71.57%)
ll_2	51,839,210	37,800,821(72.92%)	14,66,913(2.83%)	36,333,908(70.09%)
ll_3	49,484,182	37,292,580(75.36%)	11,01,398(2.23%)	36,191,182(73.14%)

sl and ll represent short and long photoperiod groups, respectively. 1/2/3 represent three biological replicates for each group. Total reads: total number of sequencing data entries after quality control (i.e., clean reads). Total mapped: number of clean reads localized to the genome. Multiple mapped: number of clean reads with multiple comparison positions in the reference sequence. Uniquely mapped: number of clean reads with a unique comparison position on the reference sequence.