TABLE 2.
Average performance of pipelines for known miRNA, novel miRNA and known piRNAs. The cells with ‘-’ indicates that pipeline does not identify that particular type of RNA.
| Pipelines | Average accuracy Across all Depths (in %) | Average F1 Score Across all Depths (in %) | ||||
|---|---|---|---|---|---|---|
| Known miRNA | Novel miRNA | Known piRNA | Known miRNA | Novel miRNA | Known piRNA | |
| miRDeep2 | 94.74 | 97.33 | - | 85.66 | 85.27 | - |
| miRDeep* | 95.67 | 99.04 | - | 88.06 | 95.47 | - |
| mirPRo | 78.73 | 93.04 | - | 1.45 | 60.93 | - |
| mirnovo | 87.59 | 91.78 | - | 60.61 | 41.95 | - |
| miRge2.0 | 82.56 | 0.0 | - | 25.90 | 0.0 | - |
| sRNAbench | 89.18 | 0.0 | 74.25 | 67.93 | 0.0 | 4.34 |
| MiR&moRe2 | 91.07 | 92.52 | - | 74.05 | 46.76 | - |
| miRPipe | 96.58 | 99.55 | 98.91 | 89.95 | 97.55 | 94.35 |
The accuracy and F1-score of known/novel miRNAs and known piRNAs in bold letters represent the outstanding performance of miRPipe pipeline.