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. 2022 Oct 19;17(10):e0260177. doi: 10.1371/journal.pone.0260177

Fig 1. Pre-processing of the HD genotype chips, reference panels and WGS EBB data.

Fig 1

Pre-processing of the HD genotype chips, reference panels and WGS EBB data downloaded from the International Genome Sample Resource (IGSR) and Estonian Biobank Estonian Genome Center respectively. Steps highlighted in orange are specific to the 1000GPphase3 reference panel only; steps highlighted in red are specific to EBB data only and steps highlighted in cyan (light blue) are specific for chip Affymetrix and Omni to isolate only a portion of the dataset to perform analysis on it. All other steps were performed for both reference panels and datasets.