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Affymetrix, Omni, Customized, and EBB input chip datasets were analyzed using the 36 combinations of 3 different phasing software, 2 phasing approaches, 3 imputation software, and 2 imputation reference panels. EBB input chip dataset was analyzed using the 36 combinations of 3 different phasing software, 2 Reference panels, 2 phasing approaches and 3 imputation software.
