Table 2.
List of genes and gene functions located within 20 Kb distance from 20 GWAS associated SNP markers.
| GWAS associated SNP | Gene description (Monoe-Viroflay annotation) | Distance from gene (Kb) | ||||||
|---|---|---|---|---|---|---|---|---|
| SNP | Chr | Position | Gene ID | Start | End | Annotation | Start | End |
| Chr3_1253998 | 3 | 1253998 | SOV3g001240 | 1237095 | 1244412 | Unknown protein | 16.903 | 9.586 |
| 1253998 | SOV3g001250 | 1246993 | 1253083 | putative disease resistance protein | 7.005 | 0.915 | ||
| 1253998 | SOV3g001260 | 1253496 | 1272509 | Protein transport protein Sec24-like | 0.502 | 18.511 | ||
| Chr3_1254008 | 3 | 1254008 | SOV3g001240 | 1237095 | 1244412 | Unknown protein | 16.913 | 9.596 |
| 1254008 | SOV3g001250 | 1246993 | 1253083 | putative disease resistance protein | 7.015 | 0.925 | ||
| 1254008 | SOV3g001260 | 1253496 | 1272509 | Protein transport protein Sec24-like | 0.512 | 18.501 | ||
| Chr3_2735424 | 3 | 2735424 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 13.272 | 17.335 |
| Chr3_2736368 | 3 | 2736368 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 14.216 | 16.391 |
| Chr3_2736465 | 3 | 2736465 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 14.313 | 16.294 |
| Chr3_2736973 | 3 | 2736973 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 14.821 | 15.786 |
| Chr3_2736989 | 3 | 2736989 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 14.837 | 15.77 |
| Chr3_2737221 | 3 | 2737221 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 15.069 | 15.538 |
| Chr3_2737270 | 3 | 2737270 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 15.118 | 15.489 |
| Chr3_2737288 | 3 | 2737288 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 15.136 | 15.471 |
| Chr3_2738051 | 3 | 2738051 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 15.899 | 14.708 |
| Chr3_2738114 | 3 | 2738114 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 15.962 | 14.645 |
| Chr3_2738382 | 3 | 2738382 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 16.23 | 14.377 |
| Chr3_2739015 | 3 | 2739015 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 16.863 | 13.744 |
| Chr3_2741024 | 3 | 2741024 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 18.872 | 11.735 |
| Chr3_2741123 | 3 | 2741123 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 18.971 | 11.636 |
| Chr3_2741149 | 3 | 2741149 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 18.997 | 11.61 |
| Chr3_2741203 | 3 | 2741203 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 19.051 | 11.556 |
| Chr3_2741229 | 3 | 2741229 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 19.077 | 11.53 |
| Chr3_2741241 | 3 | 2741241 | SOV3g002680 | 2722152 | 2752759 | Pectin acetylesterase | 19.089 | 11.518 |