TABLE 1.
Prioritized genes exhibiting preferential expression within biofilms
| Gene | Expression (TPM)a | Fold changeb |
|---|---|---|
| ssrS | 62,175.62 | 3.15 |
| ffs | 4,153.04 | 3.38 |
| leuA | 1,513.08 | 3.55 |
| cspC (ABUW_RS06720) | 1,324.94 | 3.16 |
| hslR (ABUW_RS08520) | 1,059.73 | 3.24 |
| ABUW_RS08155 | 1037.86 | 3.58 |
| ABUW_RS02640 | 737.36 | 3.18 |
| ABUW_RS09455 | 717.76 | 3.53 |
| cysD | 565.84 | 3.95 |
| ABUW_RS01835 | 554.93 | 3.92 |
| bfr_2 | 532.31 | 3.36 |
| ABUW_RS08160 | 511.43 | 4.02 |
| cysP (ABUW_RS05010) | 440.27 | 51.8 |
| iscA | 370.19 | 3.93 |
| ABUW_RS20285 | 330.21 | 3.71 |
| csp1 (ABUW_RS13055) | 325.75 | 15.48 |
| ABUW_RS09460 | 322.14 | 3.07 |
| raiA | 318.52 | 3.65 |
| ABUW_RS05005 | 293.8 | 60.17 |
| tauA | 242.59 | 16 |
| ABUW_RS18750 | 211.35 | 3.98 |
| tauB (ABUW_RS11585) | 207.38 | 15.64 |
| ABUW_RS09465 | 184.01 | 3.96 |
| ABUW_RS04445 | 175.35 | 7.93 |
| hscB | 167.95 | 3.53 |
| ABUW_RS16120 | 165.53 | 3.66 |
| ABUW_RS17360 | 163.51 | 3.24 |
| ABUW_RS20445 | 160.93 | 17.11 |
| ABUW_RS10540 | 153.08 | 12.13 |
| ABUW_RS01965 | 152.46 | 3.17 |
| recX (ABUW_RS08510) | 145.88 | 4.62 |
| tauC | 138.39 | 11.13 |
| ABUW_RS18155 | 136.84 | 5.31 |
| ABUW_RS07450 | 133.65 | 9.93 |
| ABUW_RS09695 | 131.04 | 3.56 |
| ABUW_RS13715 | 128.98 | 3.94 |
| ABUW_RS18015 | 122.17 | 4.61 |
| cysT | 121.76 | 30.66 |
| tauD | 118.66 | 7.69 |
| bfr_1 | 115.41 | 3.43 |
a
Expression is reported as the TPM of the biofilm sample measured by RNA-seq.
b
Fold change is reported as the expression of biofilm relative to the planktonic sample.