Table 4.
List of data files for the Immune Signatures Data Resource.
| File name | Description |
|---|---|
| all_noNorm_eset.rds | Gene expression matrix of all participants, log2-normalized expression |
| all_noNorm_withResponse_eset.rds | Gene expression matrix of all participants with matched immune response data, log2-normalized expression |
| all_norm_eset.rds | Gene expression matrix of all participants that are cross-study normalized and batch corrected |
| all_norm_withResponse_eset.rds | Gene expression matrix of all participants with matched simmune response dataset, cross-study normalized and batch corrected |
| young_noNorm_eset.rds | Gene expression matrix of participants aged 18–50, log2-normalized |
| young_noNorm_withResponse_eset.rds | Gene expression matrix of participants aged 18–50 with matched immune response data, log2-normalized |
| young_norm_eset.rds | Gene expression matrix of participants aged 18–50, cross-study normalized and batch corrected |
| young_norm_withResponse_eset.rds | Gene expression matrix of participants aged 18–50 with matched immune response data, cross-study normalized and batch corrected |
| old_noNorm_eset.rds | Gene expression matrix of participants aged 60–90, log2-normalized |
| old_noNorm_withResponse_eset.rds | Gene expression matrix of participants aged 60–90 with matched immune response data, log2-normalized expression |
| old_norm_batchCorrectedFromYoung_eset.rds | Gene expression matrix of participants aged 60–90, cross-study normalized and batch corrected using age correction coefficients from young |
| old_norm_batchCorrectedFromYoung_withResponse_eset.rds | Gene expression matrix of participants aged 60–90 with matched immune response data, cross-study normalized and batch corrected using age correction coefficients from young |
| extendedOld_noNorm_eset.rds | Gene expression matrix of participants aged 50–90, log2-normalized expression |
| extendedOld_noNorm_withResponse_eset.rds | Gene expression matrix of participants aged 50–90 with matched immune response data, log2-normalized counts |
| extendedOld_norm_batchCorrectedFromYoung_eset.rds | Gene expression matrix of participants aged 50–90, log2-normalized expression |
| extendedOld_norm_batchCorrectedFromYoung_withResponse_eset.rds | Gene expression matrix of participants aged 50–90 with immune response data, cross-study normalized, and batch corrected using correction coefficients from young |