Table 2.
The number of transcripts sharing protein family domains with the bacterial koreenceine biosynthesis pathway.
| The bacterial gene involved in Koreenceine synthesis | Function predicted by Lozano et al.20 | PFAM id | PFAM description | Number of Conium maculatum transcripts sharing PFAM domain |
|---|---|---|---|---|
| kecF | Pyridoxalphosphate-dependent aminotransferase | PF00202 | Aminotransferase class-III | 81 |
| kecG | Ketoreductase | PF00106 | Short-chain dehydrogenase | 436 |
| kecG | Ketoreductase | PF08659 | KR domain | 14 |
| kecG | Ketoreductase | PF13561 | Enoyl-(Acyl carrier protein) reductase | 331 |
| kecH | NAD(P)H oxidoreductase | PF00106 | Short-chain dehydrogenase | 436 |
| kecH | NAD(P)H oxidoreductase | PF08659 | KR domain | 14 |
| kecH | NAD(P)H oxidoreductase | PF13561 | Enoyl-(Acyl carrier protein) reductase | 331 |
As the plant pathway uses PKS type III, unlike the bacterial pathway, we have excluded the PKS genes and included only the polyketide accessory genes and transaminase in our analyses when comparing the bacterial genes with C. maculatum transcripts.