TABLE 5.
Resolution of phylogenetic groups in rep-PCR dendrograms in relation to cycling regimen and use of single versus multiple cyclers
| Fingerprint type | Phylogenetic group(s) fully (partiallya) resolvedb
|
|||||
|---|---|---|---|---|---|---|
| Single-cycler dendrograms
|
Combined-cycler dendrograms
|
|||||
| Standard cycling
|
65-TD cycling
|
|||||
| Cycler A | Cycler B | Cycler A | Cycler B | Standard cycling | 65-TD cycling | |
| BOXA1R | None | A (B1) | None | None (A, B2) | None | None |
| ERIC2 | B2 | B2c | B2 (A) | A, B2d | None (A, B2) | A, B2 |
| Composite | B2 | A (B2)e | A, B2 | A, B1, B2f | None (A, B2) | B2 (A) |
a
Partially resolved, one or two (single-cycler dendrograms) or one to three (combined-cycler dendrograms) scrambled fingerprints per phylogenetic group.
b
Nine fingerprints per phylogenetic group in single-cycler dendrograms and 18 fingerprints per group in combined-cycler dendrograms.
c
Shown in Fig. 4, upper left panel.
d
Shown in Fig. 4, upper right panel.
e
Shown in Fig. 4, lower left panel.
f
Shown in Fig. 4, lower right panel.