Table 1. List of genes encoded by the Psychotria viridis chloroplast genome.
| Pathway | Genes |
|---|---|
| Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbJ, psbK, psbL, psbM, psbN (same as psbf1), psbT, psbZ |
| Cytochrome b/f complex | petA, petBa, petD, petG, petL, petN |
| ATP synthase | atpA, atpB, atpE, atpFa, atpH, atpI |
| NADH dehydrogenase | ndhAa, ndhB (×2)a, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
| RubisCO large subunit | rbcL |
| RNA polymerase | rpoA, rpoB, rpoC1a, rpoC2 |
| Ribosomal proteins (SSU) | rps11, rps12, rps14, rps15, rps16a, rps18, rps19 (×2), rps2, rps3, rps4, rps7 (×2), rps8 |
| Ribosomal proteins (LSU) | rpl14, rpl16a, rpl2 (×2)a, rpl20, rpl22, rpl23 (×2), rpl32, rpl33, rpl36 |
| Other genes | infA, accD, ccsA, cemA, matK, clpPb |
| hypothetical cp genes | ycf1, ycf2 (×2), ycf3b, ycf4 |
| tRNAs | trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, trnS-UGA, trnG-GCC, trnS-GGA, trnT-UGU, trnL-UAAa, trnF-GAA, trnV-GAC, trnM-CAU (×2), trnW-CCA, trnP-UGG, trnC-ACAa (×2), trnL-CAA (×2), trnI-GAU (×2)a, trnA-UGCa (×2), trnR-ACG (×2), trnN-GUU (×2), trnL-UAG, trnV-GAC (×2), trnH-GUG, trnK-UUUa, trnQ-UUG, trnS-GCU, trnG-UCCa, trnR-UCU. |
| rRNAs (duplicated copies) | rrn23S (×2), rrn16S (×2), rrn5S (×2), rrn4.5S (×2) |
Note:
Genes are classified by pathways. Genes marked with the following signs are: (a) genes with a single intron; (b) genes with 2 introns; (×2) duplicated genes.