Figure 3.
Enrichment of differentially expressed genes in the Kyoto Encyclopedia of Genes and Genomes pathway repository. (A) Over-representation analysis of DE genes. Pathways that produced a significant signal (PFDR < 0.05) in at least one experiment are shown. (B) Normalized perturbation scores from Signaling Pathway Impact Analysis. A negative (positive) score implies that the aggregate impact of DE genes is likely to decrease (increase) the activity of a pathway. Pathways that were directionally concordant (all significant signals in the same direction) and that produced at least three significant signals (PFDR < 0.05) are included.