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. 2022 Sep 29;7(5):100570. doi: 10.1016/j.esmoop.2022.100570

Table 3.

The NGS report: minimal content requirements

Laboratory/patient/sample identifier
  • Patient’s name, date of birth, sex

  • ID number

  • Date specimen collected

  • Date specimen received

  • Date results reported

  • Ordering physician

  • Laboratory name


Specimen used for NGS testing
  • Specimen type (FFPE, frozen tissue, liquid biopsy)

  • in case of tumor tissue:

  • o

    Tissue information with diagnosis

  • o

    Tumor cell content

Results
  • Results with test name

  • Range

  • Use standard gene nomenclature

  • For variants also VAF (variant allele frequency)

Methodology/procedure
  • Target description

  • Specimen-enrichment method

  • Limit of detection

  • Additional assay limitations

Procedure
  • Type of procedure (e.g. NGS)

  • Defined target (e.g. name of target tested such as gene, locus, or genetic defect; use HUGO-approved gene nomenclature, HGVS nomenclature)

  • Analytic interpretative comment

  • Clinical interpretative comment

  • Pathologist/designee signature

  • LDT reporting language

  • ASR language

Comments
  • Significance of the result in general or in relation to this patient

  • Correlate with prior test results

  • Recommend additional measures (further testing, genetic counseling)

  • Condition of specimen that may limit adequacy of testing

  • Pertinent assay performance characteristics or interfering substances

  • Cite peer-reviewed medical literature or reliable web sites on the assay and its clinical utility

  • Document intradepartmental consultation

  • Document to whom preliminary results, verbal results, or critical values were reported and when

  • Incorporate information specifically requested on requisition

  • Answer specific questions posed by the requesting clinician

  • Reason specimen rejected or not processed to completion

  • If the report is an amended or addendum report, describe the changes or updates

  • Describe discrepancies between preliminary and final reports

  • Name of testing laboratory, if transmitting or summarizing a referral laboratory’s results

ASR, analyte specific reagents; FFPE, formalin-fixed, paraffin-embedded; HGVS, Human Genome Variation Society; HUGO, Human Genome Organisation; LDT, laboratory-developed test; NGS, next-generation sequencing.