Table 1.
Raw reads from the various echinoderm species that are available in NCBI’s SRA and Zenodo (doi: 10.5281/zenodo.6985492). Each line corresponds to transcriptome or gene expression data. Orthoclusters: number of orthoclusters. Sequences: number of amino acids or coding sequences. Length: sum of base pairs in all sequences. See complete table in Additional file 1: Table S1
| Class: Order: Family | Species | Accession | SRR | Orthoclusters | Sequences | Length |
|---|---|---|---|---|---|---|
| Crinoidea: Comatulida: Zenometridae | Psathryometra fragilis | PRJNA299480 | SRR2846085 | 6651 | 9015 | 3.16E+ 07 |
| Asteroidea: Velatida: Xyloplacidae | Xyloplax sp. Janetae (BJ2) | PRJNA299326 | SRR2846120 | 17,993 | 24,452 | 5.65E+ 07 |
| Asteroidea: Spinulosida: Echinasteridae | Echinaster spinulosus | PRJNA300370 | SRR2844624 | 13,844 | 18,608 | 6.41E+ 07 |
| Ophiuroidea: Ophiocomidea: Ophiocomidae | Ophiocoma wendtii | PRJNA299897 | SRR2845427 | 3662 | 9783 | 8.82E+ 07 |
| Ophiuroidea: Gnathophiuridea: Ophiotrichidae | Ophiothrix spiculata | PRJNA299898 | SRR2845448 | 8118 | 18,816 | 7.34E+ 07 |
| Asteroidea: Velatida: Pterasteridae | Pteraster tesselatus | PRJNA299398 | SRR2846094 | 46,531 | 51,762 | 1.71E+ 08 |
| Holothuroidea: Apodida: Synaptidae | Synapta maculata | PRJNA299890 | SRR2846103 | 5309 | 11,154 | 8.44E+ 07 |
| Echinoidea: Echinoida: Strongylocentrotidae | Strongylocentrotus purpuratus | PRJNA299888 | SRR2846101 | 6885 | 11,368 | 4.15E+ 07 |
| Asteroidea: Forcipulatida: Asteriidae | Pisaster ochraceus | PRJNA299406 | SRR2846074 | 37,807 | 43,479 | 1.68E+ 08 |
| Holothuroidea: Dendrochirotida: Psolidae | Psolus sp. (BJ11) | PRJNA299550 | NA | 24,634 | 35,310 | 1.91E+ 08 |
| Holothuroidea: Aspidochirotida: Stichopodidae | Stichopus chloronotus | PRJNA299896 | SRR2846098 | 17,953 | 24,854 | 1.09E+ 08 |
| Crinoidea: Comatulida: Colobometridae | Oligometra serripinna | PRJNA299464 | SRR2845419 | 55,472 | 70,278 | 2.11E+ 08 |
| Crinoidea: Comatulida: Bourgueticrinidae | Democrinus brevis | PRJNA299465 | SRR2844622 | 6285 | 8287 | 4.72E+ 07 |
| Asteroidea: Velatida: Korethrasteridae | Peribolaster folliculatus (BJ19) | PRJNA299409 | SRR2845673 | 16,927 | 20,462 | 8.32E+ 07 |
| Asteroidea: Paxillosida: Astropectinidae | Psilaster charcoti | PRJNA299410 | SRR2846092 | 24,055 | 28,413 | 9.41E+ 07 |
| Asteroidea: Forcipulatida: Labidiasteridae | Labidiaster annulatus | PRJNA299411 | SRR2845003 | 35,615 | 40,071 | 1.43E+ 08 |
| Asteroidea: Velatida: Korethrasteridae | Remaster gourdoni | PRJNA299412 | SRR2846097 | 18,288 | 22,056 | 8.21E+ 07 |
| Crinoidea: Hyocrinida: Hyocrinidae | Gephyrocrinus messingi | PRJNA300546 | SRR2859800 | 8950 | 12,234 | 4.42E+ 07 |
| Asteroidea: Paxillosida: Luidiidae | Luidia clathrata | PRJNA299414 | SRR2845324 | 36,915 | 77,487 | 9.42E+ 07 |
| Asteroidea: Spinulosida: Echinasteridae | Henricia leviuscula A | PRJNA299415 | SRR2844627 | 47,492 | 76,684 | 9.58E+ 07 |
| Asteroidea: Paxillosida: Astropectinidae | Astropecten duplicatus | PRJNA299417 | SRR2843238 | 42,051 | 73,744 | 9.13E+ 07 |
| Asteroidea: Valvatida: Poraniidae | Glabraster antarctica (BJ28) | PRJNA299418 | SRR2844625 | 28,408 | 54,328 | 7.71E+ 07 |
| Asteroidea: Valvatida: Asteropseidae | Asteropsis carinifera | PRJNA299419 | SRR2843236 | 25,973 | 49,607 | 6.51E+ 07 |
| Asteroidea: Valvatida: Solasteridae | Peribolaster folliculatus (BJ30) | PRJNA299409 | SRR2845673 | 22,319 | 36,551 | 5.25E+ 07 |
| Asteroidea: Notomyotida: Benthopectinidae | Cheiraster hirsutus | PRJNA299420 | SRR2844620 | 325 | 1271 | 6.85E+ 06 |
| Asteroidea: Brisingida: Brisingidae | Odinella nutrix | PRJNA299463 | SRR2845408 | 312 | 1004 | 6.83E+ 06 |
| Crinoidea: Comatulida: Ptilometridae | Ptilometra australis | PRJNA299466 | SRR2846095 | 33,084 | 49,470 | 7.31E+ 07 |
| Crinoidea: Comatulida: Comasteridae | Cenolia new species | PRJNA299468 | SRR2847917 | 11,658 | 18,875 | 3.51E+ 07 |
| Crinoidea: Comatulida: Antedonidae | Isometra vivipara | PRJNA299471 | SRR2844835 | 27,204 | 43,689 | 7.02E+ 07 |
| Crinoidea: Comatulida: Antedonidae | Phrixometra nutrix | PRJNA299469 | SRR2846073 | 4923 | 12,283 | 2.83E+ 07 |
| Crinoidea: Comatulida: Antedonidae | Promachocrinus kerguelensis | PRJNA299478 | SRR2846076 | 8011 | 12,283 | 2.83E+ 07 |
| Echinoidea: Arbacioida: Arbaciidae | Arbacia punctulata | PRJNA299547 | SRR2843235 | 13,324 | 33,220 | 4.86E+ 07 |
| Echinoidea: Cidaroida: Cidaridae | Eucidaris tribuloides | PRJNA299548 | SRR2844624 | 6939 | 16,512 | 2.97E+ 07 |
| Echinoidea: Clypeasteroida: Dendrasteridae | Dendraster excentricus | PRJNA299549 | SRR2844623 | 4619 | 12,561 | 6.57E+ 07 |
| Holothuroidea: Dendrochirotacea: Psolidae | Psolus sp. (BJ41) | PRJNA299550 | NA | 16,398 | 33,062 | 7.32E+ 07 |
| Holothuroidea: Aspidochirotida: Synallactidae | Peniagone sp. (BJ42) | PRJNA299551 | NA | 12,286 | 22,457 | 5.25E+ 07 |
| Holothuroidea: Dendrochirotacea: Cucumariidae | Abyssocucumis sp. (BJ43) | PRJNA299552 | SRR2830762 | 12,309 | 26,171 | 5.47E+ 07 |
| Holothuroidea: Aspidochirotida: Synallactidae | Pseudostichopus sp. (BJ44) | PRJNA299883 | NA | 2464 | 5567 | 1.36E+ 07 |
| Holothuroidea: Molpadida: Molpadidae | Molpadia intermedia | PRJNA299884 | SRR2845419 | 3793 | 6516 | 1.53E+ 07 |
| Holothuroidea: Elasipodida: Laetmogonidae | Pannychia moseleyi | PRJNA299885 | NA | 10,124 | 20,051 | 3.96E+ 07 |
| Ophiuroidea: Euryalida: Gorgonocephalidae | Astrophyton muricatum | PRJNA299886 | SRR2843239 | 11,730 | 26,889 | 7.31E+ 07 |
| Ophiuroidea: Ophiurida: Ophiodermatidae | Ophioderma brevispinum | PRJNA299887 | SRR2845428 | 11,757 | 28,450 | 6.52E+ 07 |