TABLE 10.
Percentage of phenotypic variance explained by the most significant SNP on SSC15 for the pork color traits at different panel densities and different populations.
| Trait | Population | Panel density | Physical position (Mb) | Percentage of phenotypic variance explained |
|---|---|---|---|---|
| GMCOLB | CB | WGS | 120.72 | 1.82 |
| GMCOLB | CB | 61K | 120.71 | 1.67 |
| FMCOLB | PB | WGS | 120.42 | 3.05 |
| FMCOLB | PB | 50K | 120.80 | 2.17 |
| FMCOLL | PB | WGS | 120.86 | 2.37 |
| FMCOLL | PB | 50K | 120.80 | 1.89 |
| ICOLB | PB | WGS | 120.67 | 2.59 |
| ICOLB | PB | 50K | 120.86 | 2.37 |
| FMCOLA | Combined CB and PB | WGS | 120.19 | 1.16 |
| FMCOLA | Combined CB and PB | Medium-density | 120.80 | 1.05 |
| FMCOLB | Combined CB and PB | WGS | 120.42 | 2.06 |
| FMCOLB | Combined CB and PB | Medium-density | 120.80 | 1.29 |
| GMCOLB | Combined CB and PB | WGS | 120.66 | 1.27 |
| GMCOLB | Combined CB and PB | Medium-density | 120.21 | 1.05 |
| ICOLB | Combined CB and PB | WGS | 120.67 | 1.57 |
| ICOLB | Combined CB and PB | Medium-density | 120.70 | 1.15 |
CB, crossbred; PB, purebred; Mb, megabyte; WGS, whole-genome sequence. Combined CB and PB means combining crossbred and purebred populations, Physical position (Mb) means genomic position in Megabyte,