TABLE 7.

Descriptive statistics of results of the GWAS for the pork colors with detected associated regions in at least one of the datasets at FDR >0.1 (CBs, PBs, Combined dataset) using different SNP densities and imputed whole-genome sequence (WGS).

CB
	61K				WGS
Trait	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor
TMCOLA	2	1	5.29	0.88	396	1	5.27	0.86
GMCOLB	1	1	6.09	0.90	183	1	5.68	0.91
Total number of QTL/significant SNPs	3	2	-	-	579	2	-	-

PB
	50K				WGS
Trait	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor
FMCOLB	6	1	4.99	0.98	1,363	5	4.86	1.00
FMCOLL	16	6	4.36	0.91	2,034	12	4.70	0.94
ICOLB	19	2	4.27	0.96	933	2	4.98	0.98
Total number of QTL/significant SNPs	41	9	-	-	4,330	19	-	-

Combined Dataset
	61K + 50K				WGS
Trait	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor	Number of significant SNPs	Number of QTL regions	Threshold	Genomic inflation factor
FMCOLA	6	4	4.98	0.90	2,773	9	4.57	0.95
FMCOLB	5	2	4.90	0.93	2,645	12	4.60	0.96
GMCOLB	8	3	4.61	0.87	2,593	9	4.60	0.97
ICOLB	8	2	4.57	0.77	3,341	7	4.49	0.85
Total number of QTL/significant SNPs	27	11	-	-	11,352	37	-	-
Total number of QTL/significant SNPs for all datasets (CBs, PBs, Combined dataset)	71	22	-	-	16,261	58	-	-

CB, crossbred; PB, purebred; SNP, single nucleotide polymorphism; WGS, whole-genome sequence; QTL, quantitative trait loci.