Chemicals, peptides, and recombinant proteins |
|
Collagenase, Type 1 |
Worthington Biochemical Corporation |
Cat#LS004196
|
Bovine Serum Albumin |
Thermo Fisher Scientific |
Cat#BP1600-1 |
Insulin solution |
Sigma-Aldrich |
Cat#I9278 |
Rosiglitazone |
Sigma-Aldrich |
Cat#557366 |
3,3′,5-Triiodo-L-thyronine (T3) |
Sigma-Aldrich |
Cat#T2877 |
HEPES |
Sigma-Aldrich |
Cat#H4034 |
D-(+)-Glucose |
Sigma-Aldrich |
Cat#G8270 |
D-(+)-Glucose solution |
Sigma-Aldrich |
Cat#G8769 |
Sodium pyruvate solution |
Sigma-Aldrich |
Cat#S8636 |
L-Glutamine solution |
Sigma-Aldrich |
Cat#G7513 |
|
Critical commercial assays |
|
Aurum Total RNA Fatty and Fibrous Tissue Kit |
Bio-Rad |
Cat#7326830 |
iScript Reverse Transcription Supermix |
Bio-Rad |
Cat#1708841 |
Seahorse XFp Cell Mito Stress Test Kit |
Agilent |
Cat#103010-100 |
Seahorse XFp FluxPak |
Agilent |
Cat#103022-100 |
Seahorse XFe24 Islet Capture FluxPak |
Agilent |
Cat#103518-100 |
Pierce BCA Protein Assay Kit |
Thermo Fisher Scientific |
Cat#23227 |
|
Deposited data |
|
RNA sequencing data |
NCBI: Gene Expression Omnibus |
NCBI GEO: GSE178720
|
CircaDB: Circadian gene expression profiles data base |
Publicly available |
http://circadb.hogeneschlab.org/mouse |
|
Experimental models: Cell lines |
|
Primary mouse brown adipocytes |
mouse brown adipose tissue |
|
|
Experimental models: Organisms/strains |
|
Mouse: K15F/F:Klf15tm2Jain
|
Jain laboratory |
|
Mouse: K15-BKO: Klf15tm2Jain x B6.FVB-Tg(Ucp1-cre)1Evdr/J |
This manuscript |
|
Mouse: Ucp1-cre: B6.FVB-Tg(Ucp1-cre)1Evdr/J |
Jackson Laboratories |
|
|
Oligonucleotides |
|
See Table S1
|
|
|
|
Software and algorithms |
|
Prism 9 |
GraphPad Prism |
|
TopHat2 |
Johns Hopkins University Center for Computational Biology |
|
Cufflinks |
Cole Trapnell’s lab - University of Washington |
|
Shinyheatmap |
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0176334 |
|
iDEP.96 |
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2486-6 |
|