Table 1.
Statistics of entities and interactions in GP-KG.
| Knowledge type | Data source | Interaction type | Interaction number |
Node type | Node number |
|---|---|---|---|---|---|
| Phenome-level knowledge | Phenomebrowser Database | Drug-relate-MP | 36,422 | Drug | 1,228 |
| Mammalian Phenotype | 1,363 | ||||
| Drug-relate-HP | 175,713 | Drug | 1,429 | ||
| Human Phenotype Ontology | 3,003 | ||||
| Mouse Genome Informatics (MGI) Database | Gene-relate-MP | 187,304 | Gene | 12,219 | |
| Mammalian Phenotype | 9,916 | ||||
| Gene Ontology Annotation (GOA) Database | Gene-relate-GO | 204,862 | Gene | 16,283 | |
| Gene Ontology | 15,924 | ||||
| Genotype-Tissue Expression (GTEx) database | Gene-relate-UT | 539,845 | Gene | 16,579 | |
| Tissue Uberon | 51 | ||||
| Human Phenotype Ontology (HPO) database | Disease-relate-HP | 87,154 | Disease | 7,172 | |
| Human Phenotype Ontology | 6,784 | ||||
| Genome-level knowledge | DrugBank database | Drug–target–Gene | 5,280 | Drug | 985 |
| Gene | 1,365 | ||||
| Mouse Genome Informatics (MGI) Database | Disease-associate-Gene | 7,382 | Disease | 4,350 | |
| Gene | 3,363 | ||||
| Text-mined knowledge | TreatKB | Drug–treat–Disease | 2,764 | Drug | 639 |
| Disease | 371 |