Table 6. Comparison of the Performance of MFBERT with Other State-of-the-Art Models from the Literaturea.
MFBERT (+FFNN) | MFBERT (best) | ChemBERTa | SSLP-FPs (best) | MoleculeNet (best) | MolBERT (fine-tune) | |
---|---|---|---|---|---|---|
BBBP* | 0.762 | 0.762 | 0.663 | 0.741 | 0.729 | 0.762 |
ClinTox* | 0.912 | 0.912 | 0.842 | 0.963 ± 0.044 | 0.907 | 0.912 |
HIV* | 0.765 | 0.765 | 0.643 | 0.601 | 0.792 | 0.783 |
ESOL† | 1.153 ± 0.141 | 0.423 ± 0.501 | 0.915 ± 0.01 | 0.58 | 0.531 ± 0.04 | |
FreeSolv† | 1.180 ± 0.440 | 0.624 ± 0.130 | 0.891 ± 0.075 | 1.15 | 0.948 ± 0.33 | |
lipophilicity† | 0.868 ± 0.021 | 0.366 ± 0.032 | 0.717 ± 0.029 | 0.655 | 0.561 ± 0.03 |
*AUCROC score; †root mean squared error (RMSE) score.