Table 1.
SASP genes identified as differentially expressed genes (DEGs) by DSEq2. The SASP genes with a blue shade were also identified using the Cuffdiff2 method in our original paper [25]. The p-value was calculated based on fold change using a Wald test. The BH method was used to control the false discovery rate.
| DEG | Log2 (Fold Change) for DESeq2 | Cuffdiff2 | DESeq2 | ||
|---|---|---|---|---|---|
| p-Value | Q-Value | p-Value | Adjusted p-Value |
||
| CXCL1 | −1.50957 | 5.00 × 10−5 | 0.00154 | 4.92 × 10−29 | 5.87× 10−25 |
| CXCL6 | −1.6105 | 5.00 × 10−5 | 0.00154 | 1.12 × 10−19 | 6.71 × 10−16 |
| CCL7 | −1.27657 | 5.00 × 10−5 | 0.00154 | 1.10 × 10−18 | 3.27 × 10−15 |
| CCL2 | −0.5778 | 5.00 × 10−5 | 0.00154 | 6.18 × 10−14 | 8.19 × 10−11 |
| IL6 | −0.88616 | 5.00 × 10−5 | 0.00154 | 6.04 × 10−13 | 7.21 × 10−10 |
| CSF3 | −2.13496 | 4.00 × 10−11 | 4.34 × 10−8 | ||
| CTSK | −0.44707 | 2.12 × 10−8 | 1.33 × 10−5 | ||
| CXCL5 | −1.2117 | 2.61 × 10−7 | 0.000148 | ||
| IL1B | −0.57528 | 5.00 × 10−5 | 0.00154 | 3.25 × 10−7 | 0.000169 |
| CXCL3 | −1.25985 | 7.44 × 10−6 | 0.00269 | ||
| IL8 | −1.32121 | 5.00 × 10−5 | 0.00154 | 2.09 × 10−5 | 0.006219 |