TABLE 2.
New viruses and endogenous viral elements found in this studya
| Virus name | Host (lineage) | RdRp phylum/order related | RT-PCR validated? (virus/host) | Coverage (quality/nb reads) | Length | Full-length vs. partial | Exogenous vs. EVE |
|---|---|---|---|---|---|---|---|
| Taphios ghabri-like virus 1 | Nannochloropsis oceanica (Eustigmatophyte) | Duplornaviricota/Ghabrivirales | Yes/Yes | Good/13,769 | 4,876 | Likely complete | Exogenous |
| Taphios ghabri-like virus 1 | Thalassiosira weissflogii (Eustigmatophyte) | Duplornaviricota/Ghabrivirales | Yes/Yes | Good/876 | 4,835 | Likely complete | Exogenous |
| Triopas ghabri -like virus 1 | Prorocentrum cf. balticum (Dinophyceae) | Duplornaviricota/Ghabrivirales | No/Yes | Average/70 | 1,425 | Partial | Exogenous |
| Diktys durna-like virus 1 | Prorocentrum lima (Dinophyceae) | Pisuviricota/Durnavirales–Partitivirus | Yes/Yes | Good/24,826 | 1,826 | Partial (one segment missing?) | Exogenous |
| Orion durna-like virus 1 | Gambierdiscus carpenteri (Dinophyceae) | Pisuviricota/Durnavirales | Yes/Yes | Good/1,198 | 2,077 | Partial (one segment missing?) | Exogenous |
| Almopos endorna-like virus 1 | Gambierdiscus carpenteri (Dinophyceae) | Kitrinoviricota/Martellivirales | Yes/Yes | Good/54,823 | 21,494 | Likely complete | Exogenous |
| Althepos endorna-like virus 1 | Gambierdiscus carpenteri (Dinophyceae) | Kitrinoviricota/Martellivirales | Yes/Yes | Good/460 | 4,825 | Likely complete | Exogenous |
| Phineus pisuviri-like virus 1 | Rhodella maculata (Rhodophyta) | Pisuviricota/Picornavirales | Yes/Yes | Good/14,972 | 6,398 | Likely complete | Exogenous |
| Megareus marna-like virus 1 | Nannochloropsis oculata (Stramenopiles) | Pisuviricota/Picornavirales | No/No | Good/425 | 1,222 | Partial | Exogenous |
| Minyas marna-like virus 1 | Nannochloropsis oculata (Stramenopiles) | Pisuviricota/Picornavirales | No/No | Good/472 | 1,130 | Partial | Exogenous |
| Pisuviri-like signal | Euglena gracilis (Euglenozoa) | Pisuviricota/uncertain placement | Yes/Yes | Good/1,531 | 1,484 | EVE | EVE |
aFull-length versus partial information was hypothesized from genomic length and organization. EVE, endogenous viral element; RdRp, RNA-dependent RNA polymerase; RT-PCR, reverse transcription PCR.