TABLE 3.
Tetherin source and type | cDNA amplification primer | Primer sequence (5′ > 3′) | Direction | Target region | Successful combinations | PCR TA (°C) |
---|---|---|---|---|---|---|
Pteropus alecto | ||||||
Tetherin | PaF1_JH_119 | TCACTGCAAGGGGTTCTCTC | Forward | 5′ UTR | 119/121−2 | 60 |
PaF2_JH_120 | GGAAACTTCACTGCAAGGGG | Forward | 5′ UTR | 120/121−2 | 60 | |
PaR1_JH_121 | CTTCTCCCAGCTTTGTTGCC | Reverse | 3′ UTR | |||
PaR2_JH_122 | CTCCTCTCCCCCAAAATGTC | Reverse | 3′ UTR | |||
Miniopterus schreibersii | ||||||
Tetherin | MiniF1_JH_466 | CCCACAAACTCCCTACACCC | Forward | 5′ UTR | 466/468 | 60 |
MiniF2_JH_467 | ATGCTAATGAAGGGGCGGGG | Forward | 5′ UTR | 466/469 | 62 | |
MiniR1_JH_468 | CTGTCTGTCTTCCTGGGAC | Reverse | 3′ UTR | 467/469 | 62 | |
MiniR2_JH_469 | GGACAGGTCAGGGAAACCAA | Reverse | 3′ UTR | |||
Myotis macropus and Myotis ricketti | ||||||
Tetherins A, C, and D | MyoF1_JH_479 | TCCACTGCATCCCTCTG | Forward | 5′ UTR | 479/481−4 | 60 |
MyoF2_JH_480 | ATGGCACCCACTTTTTAC | Forward | 5′ UTR | 480/481−4 | 60 | |
MyoR1_JH_481 | TCAGCCAGGTTAGAATGTG | Reverse | 3′ UTR | |||
MyoR2_JH_482 | TCCTTGGGCAAACAGCTCTC | Reverse | 3′ UTR | |||
MyoR3_JH_483 | CAGGAAACTCTCAGAAAAG | Reverse | 3′ UTR | |||
MyoR4_JH_484 | CATCTTTCCAAGACCACA | Reverse | 3′ UTR | |||
Tetherins B and E | MyoF3_JH_474 | GCTCCTGTGCATCCCTCTGG | Forward | 5′ UTR | 474/478 | 60 |
MyoR5_JH_478 | CCTGGTTAGAATGTGCTTT | Reverse | 3′ UTR |
Primers used to amplify tetherin homologues from cDNA generated from Myotis macropus, M. ricketti, and Miniopterus schreibersii. Combinations of forward and reverse primers identified as capable of amplifying tetherin are indicated alongside the highest annealing temperature at which amplification was successful. UTR, untranslated region; TA, annealing temperature.