Table 1.
List of primers used for microbiota phylogenetic determination.
| Study Ref. |
Primers | Target | Sequence | Gram | Phylum | Order |
|---|---|---|---|---|---|---|
| [21] | 534/358 | 16S | ATTACCGCGGCTGCTGG | Bacterial (universal) | ||
| CCTACGGGAGGCAGCAG | ||||||
| [22] | Firm | Firmicutes | GGAGYATGTGGTTTAATTCGAAGCA | Gram + | Firmicutes | |
| AGCTGACGACAACCATGCAC | ||||||
| [23] | Lac | Lactobacillus spp. | AGCAGTAGGGAATCTTCCA | Lactobacilliales | ||
| CATTYCACCGCTACACATG | ||||||
| [24] | Atopo | Atopobacter spp. | GGGTTGAGAGACCGACC | |||
| CGGRGCTTCTTCTGCAGG | ||||||
| [24] | Ccoc | Clostridium coccoides | AAATGACGGTACCTGACTAA | Clostridialles | ||
| CTTTGAGTTTCATTCTTGCGAA | ||||||
| [24] | Clept | Clostridium leptum | GCACAAGCAGTGGAGT | |||
| CTTCCTCCGTTTTGTCAA | ||||||
| [22] | Act | Actinobacteria | TACGGCCGCAAGGCTA | Actinobacteria | ||
| TCRTCCCCACCTTCCTCCG | ||||||
| [23] | Bifid | Bifidobacterium spp. | CTCCTGGAAACGGGTGG | |||
| GGTGTTCTTCCCGATATCTACA | ||||||
| [22] | Bact | Bacteroidetes | GGARCATGTGGTTTAATTCGATGAT | Gram − | Bacteroidetes | |
| AGCTGACGACAACCATGCAG | ||||||
| [24] | Bfra | Bacteroides fragilis | ATAGCCTTTCGAAAGRAAGAT | |||
| CCAGTATCAACTGCAATTTTA | ||||||
| [25] | Prevo-F/BacPre-R | Prevotella spp. | CRCRCRGTAAACGATGGATG | |||
| TTGAGTTTCACCGTTGCCGG | ||||||
| [22] | Prot | Proteobacteria | TCGTCAGCTCGTGTYGTGA | Proteobacteria | ||
| CGTAAGGGCCATGATG | ||||||
| [25] | Ent | Enterobacteria | GACCTCGCGAGAGCA | |||
| CCTACTTCTTTTGCAACCCA | ||||||