TABLE 2.
Genome statistics for “Ca. Thermopylae lasonolidus”a
| Characteristic | Data for: |
|
|---|---|---|
| Forcepia_v1 “Ca. Thermopylae lasonolidus” | Forcepia_v2 “Ca. Thermopylae lasonolidus” | |
| Size (Mbp) | 4.85 | 4.93 |
| Size (Mbp) after adding the three las repeats | 5.05 | 5.13 |
| checkM completeness (%) | 99.24 | 99.32 |
| checkM contamination (%) | 1.35 | 1.35 |
| No. of contigs | 144 | 92 |
| Longest contig (bp) | 204,102 | 649,894 |
| N50 (bp) | 52,980 | 96,223 |
| Avg GC% | 53.81 | 53.88 |
| % of pseudogenes out of total ORFs | 16.31 | 16.62 |
| No. of transposase genes | 6 | 15 |
| Coding density (%)a | 79.45 | 79.41 |
| Coding density without pseudogenes (%)a | 72.58 | 72.38 |
| Characteristics of eukaryotic-like proteins | ||
| No. of ankyrin repeats | 3 | 3 |
| No. of tetratricopeptide repeat | 43 (9 Sel-1 repeats) | 42 (9 Sel-1 repeats) |
| No. of Pyrrolo-quinoline quinone-encoding genes | 21 | 21 |
| No. of leucine-rich repeats | 16 | 16 |
| No. of WD40 repeats | 4 | 5 |
a
Coding density is weighted by length, taking into account the 97.11% coding density of las BGC repeats.