CNVs	Copy number variations
CPM	Counts per million reads
EMT	Epithelial–mesenchymal transition
ESTIMATE	Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data
GSEA	Gene-set-enrichment analysis
GO	Gene ontology
KEGG	Kyoto Encyclopedia of Genes and Genomes
MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4
SNVs	Single nucleotide variations
STAD	Stomach adenocarcinoma
TAMs	Tumor-associated macrophages
TCGA	The Cancer Genome Atlas
TNBC	Triple-negative breast cancer
TME	Tumor microenvironment
WB	Western blotting