TABLE 1.
Primers used for G- and P-type characterization
| Assay and primer | Sequence (5′→3′) | Sense | Positiong |
|---|---|---|---|
| G typing | |||
| Beg9a | GGCTTTAAAAGAGAGAATTTCCGTCTGG | + | 1–28 |
| sBeg9b | GGCTTTAAAAGAGAGAATTTC | + | 1–21 |
| End9a | GGTCACATCATACAATTCTAATCTAAG | − | 1062–1036 |
| sEnd9 (RVG9)a | GGTCACATCATACAATTC | − | 1062–1045 |
| G1 (aBT1)a | CAAGTACTCAAATCAATGATGG | + | 314–335 |
| G2(aCT2)a | CAATGATATTAACACATTTTCTGTG | + | 411–435 |
| G3(aET3)a | CGTTTGAAGAAGTTGCAACAG | + | 689–709 |
| G4(aDT4)a | CGTTTCTGGTGAGGAGTTG | + | 480–498 |
| G9 (aFT9)a | CTAGATGTAACTACAACTAC | + | 757–776 |
| G5(FT5)b | CACGTACTCGTTGTTACGTC | − | 779–760 |
| G6(DT6)b | CTAGTTCCTGTGTAGAATC | − | 499–481 |
| G8 (HT8)b | CGGTTCCGGATTAGACAC | − | 273–256 |
| G10(ET10)b | TTCAGCCGTTGCGACTTC | − | 714–697 |
| G11 (BT11)b | GTCATCAGCAATCTGAGTTGC | − | 336–316 |
| Bov9Com3c | TCACATCATACAACTCTAATCT | − | 1038–1060 |
| Bov9Com5c | TGTATGGTATTGAATATACCA | + | 50–71 |
| G6c | GGTATCAGCTATTTCGTTTGAT | − | 336–315 |
| G10c | AACGTTCTAGTATTTGTGGTCT | − | 692–671 |
| P typing | |||
| Con2d | ATTTCGGACCATTTATAACC | − | 887–868 |
| Con3d | TGGCTTCGCTCATTTATAGACA | + | 11–32 |
| P1 (pNCDV)e | CGAACGCGGGGGTGGTAGTTG | + | 269–289 |
| P5 (pUK)e | GCCAGGTGTCGCATCAGAG | + | 336–354 |
| P11 (pB223)e | GGAACGTATTCTAATCCGGTG | + | 574–594 |
| P6 (pGott)e | GCTTCAACGTCCTTTAACATCAG | + | 465–487 |
| P7 (pOSU)e | CTTTATCGGTGGAGAATACGTCAC | + | 389–412 |
| Bov4Com5f | TTCTTATTGGGACGATTCACA | + | 1067–1088 |
| Bov4Com3f | CAACCGCAGCTGATATATCATC | − | 1930–1909 |
| P1f | TTAAATTCATCTCTTAGTTCTC | − | 1526–1505 |
| P5f | GGCCGCATCGGATAAAGAGTCC | − | 1725–1704 |
| P11f | TGCCTCATAATATTGTTGGTCT | − | 1398–1377 |