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. 2001 Jan;8(1):129–132. doi: 10.1128/CDLI.8.1.129-132.2001

TABLE 1.

Primers used for G- and P-type characterization

Assay and primer Sequence (5′→3′) Sense Positiong
G typing
 Beg9a GGCTTTAAAAGAGAGAATTTCCGTCTGG + 1–28
 sBeg9b GGCTTTAAAAGAGAGAATTTC + 1–21
 End9a GGTCACATCATACAATTCTAATCTAAG 1062–1036
 sEnd9 (RVG9)a GGTCACATCATACAATTC 1062–1045
 G1 (aBT1)a CAAGTACTCAAATCAATGATGG + 314–335
 G2(aCT2)a CAATGATATTAACACATTTTCTGTG + 411–435
 G3(aET3)a CGTTTGAAGAAGTTGCAACAG + 689–709
 G4(aDT4)a CGTTTCTGGTGAGGAGTTG + 480–498
 G9 (aFT9)a CTAGATGTAACTACAACTAC + 757–776
 G5(FT5)b CACGTACTCGTTGTTACGTC 779–760
 G6(DT6)b CTAGTTCCTGTGTAGAATC 499–481
 G8 (HT8)b CGGTTCCGGATTAGACAC 273–256
 G10(ET10)b TTCAGCCGTTGCGACTTC 714–697
 G11 (BT11)b GTCATCAGCAATCTGAGTTGC 336–316
 Bov9Com3c TCACATCATACAACTCTAATCT 1038–1060
 Bov9Com5c TGTATGGTATTGAATATACCA + 50–71
 G6c GGTATCAGCTATTTCGTTTGAT 336–315
 G10c AACGTTCTAGTATTTGTGGTCT 692–671
P typing
 Con2d ATTTCGGACCATTTATAACC 887–868
 Con3d TGGCTTCGCTCATTTATAGACA + 11–32
 P1 (pNCDV)e CGAACGCGGGGGTGGTAGTTG + 269–289
 P5 (pUK)e GCCAGGTGTCGCATCAGAG + 336–354
 P11 (pB223)e GGAACGTATTCTAATCCGGTG + 574–594
 P6 (pGott)e GCTTCAACGTCCTTTAACATCAG + 465–487
 P7 (pOSU)e CTTTATCGGTGGAGAATACGTCAC + 389–412
 Bov4Com5f TTCTTATTGGGACGATTCACA + 1067–1088
 Bov4Com3f CAACCGCAGCTGATATATCATC 1930–1909
 P1f TTAAATTCATCTCTTAGTTCTC 1526–1505
 P5f GGCCGCATCGGATAAAGAGTCC 1725–1704
 P11f TGCCTCATAATATTGTTGGTCT 1398–1377
a

Data from Gouvea et al. 12

b

Data from Gouvea et al. 14

c

Data from Isegawa et al. 17

d

Data from Gentsch et al. 10

e

Data from Gouvea et al. 13

f

Data from Isegawa et al. 17

g

Primer locations are indicated as originally reported in the corresponding reports.