| BBB | Blood–brain barrier |
| BCRP | Breast cancer resistance protein |
| P-gp | P-glycoprotein |
| CNS | Central nervous system |
| SMILES | Simplified Molecular Input Line Entry System |
| ECFP4 | Extended Connectivity Fingerprint |
| MMFF94 | Merck Molecular Force Field |
| SDF | Structure-Data File |
| TMAP | Tree MAP |
| PDB | Protein Data Bank |
| PDBQT | Protein Data Bank, Partial Charge and Atom Type |
| GNN | Graph Neural Network |
| GCN | Graph Convolution Network |
| GAT | Graph Attention Network |
| ELU | Exponential Linear Unit |
| SVM | Support Vector Machine |
| RF | Random Forest |
| TPSA | Topological Polar Surface Area |
| HBA | Hydrogen Bond Acceptor |
| HBD | Hydrogen Bond Donor |
| RGCN | Relational Graph Convolution Network |
| QSAR | Quantitative structure activity relationship |
| PBPK | Physiologically Based pharmacokinetics |