TABLE 2.
Distribution of NGS reads matching to viruses as identified by Lazypipe (33)
| Animal no. (material) | No. of reads | No. of contigs | Virus family | Genus |
|---|---|---|---|---|
| C1 (FFPE: liver, kidney, lung, intestine) | 195 | 3 | Arenaviridae | Reptarenavirus |
| 7 | 0 | Picobirnaviridae | Unknown | |
| C2 (FFPE: brain) | 1,090 | 0 | Partitiviridae | Unknown |
| 85 | 3 | Adenoviridae | Mastadenovirus | |
| 32 | 1 | Nodaviridae | Alphanodavirus | |
| 4 | 1 | Arenaviridae | Reptarenavirus | |
| C3 (FFPE: brain, liver, spleen) | 15,921 | 6 | Arenaviridae | Reptarenavirus |
| 64 | 0 | Partitiviridae | Unknown | |
| 37 | 0 | Picobirnaviridae | Unknown | |
| 33 | 0 | Hypoviridae | Unknown | |
| 17 | 0 | Unknown | Unknown | |
| 13 | 2 | Adenoviridae | Mastadenovirus | |
| 13 | 2 | Botourmiaviridae | Ourmiavirus | |
| 4 | 1 | Chrysoviridae | Betachrysovirus | |
| C4 (FFPE: brain, liver, spleen) | 9,063 | 0 | Unknown | Unknown |
| 2,463 | 5 | Chrysoviridae | Chrysovirus | |
| 1,868 | 5 | Botourmiaviridae | Ourmiavirus | |
| 1,340 | 0 | Partitiviridae | Unknown | |
| 791 | 1 | Partitiviridae | Gammapartitivirus | |
| 528 | 3 | Chrysoviridae | Betachrysovirus | |
| 340 | 0 | Picobirnaviridae | Unknown | |
| 199 | 3 | Arenaviridae | Reptarenavirus | |
| 18 | 1 | Chrysoviridae | Alphachrysovirus | |
| 2 | 1 | Endornaviridae | Alphaendornavirus | |
| C7 (cell culture medium) | 49,006 | 132 | Arenaviridae | Reptarenavirus |
| 343 | 6 | Arenaviridae | Hartmanivirus | |
| W1 (FFPE: liver) | 3,570 | 7 | Arenaviridae | Reptarenavirus |
| 3 | 1 | Adenoviridae | Mastadenovirus | |
| W2 (FFPE: liver) | 10,182 | 10 | Arenaviridae | Reptarenavirus |
| W3 (FFPE: tissues) | 54,831 | 8 | Arenaviridae | Reptarenavirus |
| 6 | 1 | Retroviridae | Gammaretrovirus | |
| W4 (frozen liver) | 66,140 | 200 | Arenaviridae | Reptarenavirus |
| W4 (cell culture medium) | 25,399 | 18 | Arenaviridae | Reptarenavirus |
| W5 (frozen brain) | 29,780 | 275 | Arenaviridae | Reptarenavirus |
| 1,297 | 2 | Arenaviridae | Hartmanivirus | |
| W5 (cell culture medium) | 23,786 | 11 | Arenaviridae | Reptarenavirus |
| 298 | 7 | Arenaviridae | Hartmanivirus |