TABLE 2.
Genomic properties of isolates examined in this study
| Strain | STIPa | STOXb | OC | KL | Antibiotic resistance gene(s) | GenBank accession no. |
|---|---|---|---|---|---|---|
| UC22850 | 1 | 231 | 1 | 1 | aphA6, sul1, tetA(A), catA1, aacC2, blaTEM | CP076821, CP076822 |
| UC22863 | 1 | 231 | 1 | 1 | aphA6, sul1, catA1, tetA(A), aacC2, blaTEM | JAHIDA000000000 |
| UC23742 | 1 | 231 | 1 | 1 | aphA6, sul1, catA1, tetA(A), aacC2, blaTEM | JAHICZ000000000 |
| UC20371 | 15 | 225 | 7 | 22 | aphA6, sul2, blaTEM, catA2, aacC2, blaTEM | JAHICY000000000 |
| UC20932 | 15 | 236 | 7 | 9 | aphA6, oxa58 | JAHICX000000000 |
| UC21698 | 15 | 236 | 7 | 9 | aphA6, sul2, strAB | JAHICW000000000 |
| UC22488 | 15 | 225 | 7 | 22 | aphA6, aacC2, blaTEM | JAHICV000000000 |
| UC22807 | 15 | 225 | 7 | 22 | aphA6, sul2, aacC2, blaTEM-1B, catA2, aacC2, blaTEM | JAHICU000000000 |
| UC24137 | 15 | 225 | 7 | 22 | aphA6, sul2, aacC2, aadA, oxa23, aadB, blaTEM, floR | CP076817–CP076820 |
| UC25816 | 15 | 225 | 7 | 22 | aphA6, sul2, aacC2, blaTEM | JAHICT000000000 |
| UC27639 | 15 | 225 | 7 | 22 | aphA6, sul2, aacC2, blaTEM, catA | JAHICS000000000 |
| UC21460 | 318 | 225 | 7 | 22 | aphA6 (2×), oxa58 | CP076814–CP076816 |
| UC23723 | 318 | 225 | 7 | 22 | aphA6 (2×), oxa23 | JAHICR000000000 |
| UC23022 | 79 | 1283 | 1 | 9 | aphA6, sul2, aadA1, dfrA1, strAB, cmlB1, oxa23, blaTEM | CP076812, CP076813 |
| UC25431c | 79 | 1283 | 1 | 9 | aphA6, sul2, aadA1, dfrA1, strAB, cmlB1, oxa23, blaTEM | JAHICQ000000000 |
| UC25532 | 79 | 1283 | 1 | 9 | aphA6, sul2, aadA1, dfrA1, strAB, cmlB1, oxa23, blaTEM | JAHICP000000000 |
| UC25534 | 79 | 1283 | 1 | 9 | aphA6, sul2, aadA1, dfrA1, strAB, cmlB1, oxa23, blaTEM | JAHICO000000000 |
| UC25565c | 79 | 1283 | 1 | 9 | aphA6, sul2, aadA1, dfrA1, strAB, cmlB1, oxa23, blaTEM | JAHICN000000000 |
| UC20804 | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA1 (2×), dfrA1 (2×), strAB, aadB, oxa58 (2×), catB2 | CP076807–CP076811 |
| UC21421 | 109 | 1637 | 3 | 9 | aadA, dfrA1, aadB, oxa58, catB2 | JAHICM000000000 |
| UC22612 | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICL000000000 |
| UC23844 | 109 | 1637 | 3 | 9 | sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICK000000000 |
| UC24803 | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICJ000000000 |
| UC25167d | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICI000000000 |
| UC25224 | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICH000000000 |
| UC25235d | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICG000000000 |
| UC25271 | 109 | 1637 | 3 | 9 | aphA6, sul2, aacC2, aadA, dfrA1, strAB, aadB, oxa58, catB2 | JAHICF000000000 |
| UC25560 | 109 | 1637 | 3 | 9 | aadA, dfrA1, aadB, oxa58, catB2 | JAHICE000000000 |
| UC20520 | 162 | 235 | 1 | 19 | aphA6, oxa23, mph-msr(E) | JAHICD000000000 |
| UC20976 | 162 | 235 | 1 | 19 | aphA6, oxa23 | JAHICC000000000 |
| UC21311 | 162 | 235 | 1 | 19 | aphA6, aadA, oxa23, sul1, mph-msr(E), aadA2, armA, dfrA12 | JAHICB000000000 |
| UC21742 | 162 | 235 | 1 | 19 | aphA6, sul2, aadA, oxa23, aadB, floR | JAHICA000000000 |
| UC24371 | 162 | 235 | 1 | 19 | aphA6, oxa23 | CP076804–CP076806 |
| UC25604 | 162 | 235 | 1 | 19 | oxa23 | CP076801–CP076803 |
a
STIP, ST according to the Institut Pasteur MLST scheme (cpn60-fusA-gltA-pyrG-recA-rplB-rpoB).
b
STOX, ST according to the Oxford MLST scheme (gltA-gyrB-gdhB-recA-cpn60-gpi-rpoD).
c
Isolates recovered from the same patient.
d
Isolates recovered from the same patient.