. 2022 Aug 16;10(5):e01442-22. doi: 10.1128/spectrum.01442-22

TABLE 3.

Identification discrepancies^a

Organism ID	SOC identification	APAS-assisted study identification
APAS_0043	*K. pneumoniae*	MUF^b
APAS_0046	Morganella morganii, *K. pneumoniae*	M. morganii
APAS_0081	E. coli, K. oxytoca	E. coli, K. oxytoca, *K. pneumoniae*
APAS_0083	E. faecalis	E. faecalis, *K. pneumoniae*
APAS_0104	MUF	*Enterococcus faecium*
APAS_0107	*C. glabrata*	MUF
APAS_0166	E. faecalis, *C. albicans*	E. faecalis
APAS_0169	*C. glabrata*	MUF
APAS_0227	E. coli	E. coli, *E. faecalis*
APAS_0230	*Candida lusitaniae*	*C. albicans*
APAS_0241	MUF	*E. coli, S. agalactiae*
APAS_0337	MUF	*E. faecalis*
APAS_0362	K. oxytoca, Myroides odoratimimus, *Providencia rettgeri*	K. oxytoca, M. odoratimimus, *M. morganii*
APAS_0414	MUF	*C. tropicalis*
APAS_0470	*E. coli*	MUF
APAS_0476	Citrobacter koseri, E. coli	C. koseri, E. coli, *E. faecalis*
APAS_0512	MUF	*S. saprophyticus*
APAS_0517	E. coli	E. coli, *C. koseri*
APAS_0519	MUF	*E. faecalis*, MUF
APAS_0558	E. coli	E. coli, *C. koseri*
APAS_0562	*P. aeruginosa*	MUF
APAS_0668	K. oxytoca, *E. coli*	K. oxytoca, *Enterobacter* sp.
APAS_0765	M. morganii	M. morganii, *K. pneumoniae*
APAS_0778	MUF	*K. pneumoniae*
APAS_0780	S. epidermidis, *Streptococcus gallolyticus*	S. epidermidis
APAS_0782	S. haemolyticus	S. haemolyticus, Candida sp.
APAS_0902	MUF	*E. coli*
APAS_0921	*S. aureus*	MUF
APAS_0932	P. aeruginosa	P. aeruginosa, *K. pneumoniae*
APAS_0945	*E. faecalis*	NSG^c
APAS_0960	Citrobacter freundii	C. freundii, *E. faecalis, E. coli*
APAS_0964	MUF	*P. mirabilis*
APAS_0983	S. agalactiae	S. agalactiae, *E. faecalis, E. coli*
APAS_1016	E. coli, P. mirabilis	E. coli, P. mirabilis, *K. pneumoniae*
APAS_1070	K. pneumoniae	K. pneumoniae, *E. coli*
APAS_1082	E. coli	E. coli, *P. mirabilis*
APAS_1146	E. coli	E. coli, *E. faecalis*
APAS_1152	MUF	*E. coli*
APAS_1170	Candida kefyr	C. kefyr, *C. albicans*
APAS_1186	MUF	*E. faecalis*
APAS_1204	NSG	*K. pneumoniae*
APAS_1206	K. pneumoniae, P. mirabilis	K. pneumoniae, P. mirabilis, *K. oxytoca*
APAS_1276	*Proteus hauseri*	*P. mirabilis, E. coli*
APAS_1293	E. coli, *K. oxytoca*	E. coli, *P. aeruginosa*
APAS_1312	MUF	*E. faecalis*
APAS_1313	Klebsiella variicola, *K. pneumoniae*	K. variicola
APAS_1341	Klebsiella aerogenes	K. aerogenes, *E. coli*
APAS_1344	Enterobacter cloacae	E. cloacae, *E. faecalis*
APAS_1349	E. coli	E. coli, *K. aerogenes*
APAS_1350	E. faecalis, E. coli	E. faecalis, E. coli, *S. marcescens*
APAS_1352	E. coli, C. koseri	E. coli, C. koseri, *P. mirabilis*
APAS_1353	K. variicola	K. variicola, *E. coli*
APAS_1400	MUF	*E. faecalis*
APAS_1445	E. coli, *E. faecalis*	E. coli
APAS_1478	M. morganii	M. morganii, *Citrobacter amalonaticus*
APAS_1488	P. mirabilis	P. mirabilis, *P. aeruginosa*

Bold indicates microbial isolates identified in only 1 of the 2 workflows.

MUF, mixed urethral flora.

NSG, no significant growth.